Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2393 ATGGCTGTGGCAATAGGAAGAAACTTCAATTTTCAGCCATGCTCTCCCTTCAAAAGTAAGACCATCTTCATACATAAACCTTCACCAGGAATAACATACTTGTGGCTCCACCCTGCTGCAGGAGCCAGAGTCGCTAATGGACGCAGTAGGCAAATTTGTGCGGCAGAGCAACAGCGAGCAACATGGCTCCCAGGGCTCGATCCCCCGTCCTATCTTGACGGAACTTTGGCTGGAGATTTCGGGTTTGACCCTCTTGGACTTGGAGAGGATCCTGAAAGCTTGAGATGGTATGTGCAAGCAGAACTAGTCCACTGTCGCTTTGCCATGCTTGGAGTCCTGGGAATTCTTGTCACAGATTTACTCCGTGTCACAGGACTTAGTAAGATACCAGTTTGGTTTGAAGCGGGTGCAGCGAAATATGACATTGCCAACACACAGACCCTTTTAGTTGTTCAACTAATCTTGATGGGGTTTGTTGAAACAAAAAGGTACATGGATTTTGTTAGCCCTGGATCTCAAGGTAAAGCCTCCTTCTTTGGAATAGAAGATTCATTTGAAGGCTTGGAGCCAGGCTATCCTGGGGGACCTATATTAAATCCCCTTGGCCTAGCCAAAGACATAAAAAATGCTCATGACTGGAAGCTTAAAGAGATCAAGAATGGGCGACTCGCAATGGTGGCAATGCTTGGGATTTTTGTGCAAGCTTCGGTGACACATGTTGGACCAATTGATAACCTTGTGGAGCATCTCTCCAATCCATGGCATAAGACTATTATTCAGACCCTTGCCAATTCTTAG 798 0.4624 MAVAIGRNFNFQPCSPFKSKTIFIHKPSPGITYLWLHPAAGARVANGRSRQICAAEQQRATWLPGLDPPSYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHCRFAMLGVLGILVTDLLRVTGLSKIPVWFEAGAAKYDIANTQTLLVVQLILMGFVETKRYMDFVSPGSQGKASFFGIEDSFEGLEPGYPGGPILNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLANS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2393 265 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
Amo17g2393 265 SUPERFAMILY Chlorophyll a-b binding protein 56 263 - -
Amo17g2393 265 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC 1 263 - -
Amo17g2393 265 Gene3D Chlorophyll a/b binding protein domain 69 255 - -
Amo17g2393 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 263 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2393 Amo-Chr17 119844251 119845625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2393 49 262 Chloroplast and Mitochondria Gene Families AT3G61470 46.047 1.04e-61 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2393 K08911 - gmx:100804934 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2393 17 119844251 119845625 Amo17g2393 17 119844251 119845625 ECH