Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2374 ATGGAAGCATTGAATAATAGAAGCTCATCGTGCACAGCTTCTTCTTCGGACTCTTCGTCGTCGGAGTCAACGCAAAGGAATCCCAACAGGCCCGAGAGGATCAAAGGTCCATGGAGCGCAGAAGAAGACCGGATCCTGACCCGCTTGGTGGAGAGATACGGGGCACGAAACTGGACTCTCATTAGTCGCTACATAAAGGGGAGGTCGGGCAAGTCCTGCAGACTAAGGTGGTGCAACCAGCTAAGCCCAACGGTGGAGCACCGTCCCTTCTCCTCCCACGAGGACGACACCATCATCGCCGCCCATGCCCAGTACGGTAACAGATGGGCCACCATTGCCAGGTTATTGCCGGGCCGAACCGATAACGCTGTAAAGAACCACTGGAACTCCACTCTCAAGCGGAGGGCCAGAGACCAACGTCGCGGTGGTAGTGCTACCGGAGTTCACGCTACTTGCGCTTCTCTTGCTGCGGCGCCAACAAACGAGAGAGCCTCGTGTTCTTCAGGGGCCCTGCCACCTTGCACGTTGCCCTTGGAGGATGACCCGTTGACTGCGTTGACTCTTGCCCCGCCTGGGATTGATCGTGGTAGCGGTGCGGTGGAGGCGGAGCAACAGCGAGCCTCGCCGGAGACTAGTGTGGGTTCAGGGTTTTGGGATGTGATGAGGGATGTGATTGCCAGGGAAGTGAGGGAATATGTATCTTCAAATTTCTCTGACCACTCTAATTTTCATTGA 735 0.5605 MEALNNRSSSCTASSSDSSSSESTQRNPNRPERIKGPWSAEEDRILTRLVERYGARNWTLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSSHEDDTIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRARDQRRGGSATGVHATCASLAAAPTNERASCSSGALPPCTLPLEDDPLTALTLAPPGIDRGSGAVEAEQQRASPETSVGSGFWDVMRDVIAREVREYVSSNFSDHSNFH* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2374 244 CDD SANT 89 132 IPR001005 -
Amo17g2374 244 Gene3D - 34 86 - -
Amo17g2374 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 136 IPR017930 -
Amo17g2374 244 MobiDBLite consensus disorder prediction 188 213 - -
Amo17g2374 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 85 IPR017930 -
Amo17g2374 244 MobiDBLite consensus disorder prediction 1 38 - -
Amo17g2374 244 SMART sant 86 134 IPR001005 -
Amo17g2374 244 SMART sant 34 83 IPR001005 -
Amo17g2374 244 CDD SANT 37 79 IPR001005 -
Amo17g2374 244 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Amo17g2374 244 MobiDBLite consensus disorder prediction 1 27 - -
Amo17g2374 244 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Amo17g2374 244 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Amo17g2374 244 PANTHER MYB PROTEIN-RELATED 1 229 - -
Amo17g2374 244 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 229 - -
Amo17g2374 244 Pfam Myb-like DNA-binding domain 38 95 - -
Amo17g2374 244 Gene3D - 88 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2374 Amo-Chr17 119526592 119527562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2374 32 135 MYB Transcription Factor Family AT5G67300 78.846 1.44e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo17g2374 Myb_DNA-bind_6 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2374 - - gmx:778051 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2374 17 119526592 119527562 Amo17g2374 17 119526592 119527562 ECH