Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2349 ATGAAGAGAGGAAGAGAGCAGATAGAGGTGGATAATTGTTTGACGCTACTAAGCAAAGTTGGAGAAAGCGATAAGATTAGTTCAGTGAAGGGTAAAGAGTTAATGATAGATGATGGTGCTTTTAAGTGCAAGACATGCGAAAGAAGCTTCACTTCTTTTCAAGCACTTGGAGGCCATAGAGCGAGCCACAAGAAGCCCAAGCTCATGGTTTTGGGCCTATCATGCCATGATCACCACTTACGGGGACCCAACACTAAGCCCAGGATGCACCCATGCCCGATTTGTGGGGTTGAGTTTTCAATTGGACAAGCCCTTGGAGGACACATGAGAAAGCATAGGGTTGCCACCGCTAAAGATGATGAGGGTGATGGTAATGATCATCATAATAAGAGGTTAAATCTGTGCTTGGATTTGAACTTGACGCCATTTGAGAATGATCTTATTAAGCTCGGCCTCATGAGGAGGATTCCTCTTCTTTCATTTCATTGA 489 0.4417 MKRGREQIEVDNCLTLLSKVGESDKISSVKGKELMIDDGAFKCKTCERSFTSFQALGGHRASHKKPKLMVLGLSCHDHHLRGPNTKPRMHPCPICGVEFSIGQALGGHMRKHRVATAKDDEGDGNDHHNKRLNLCLDLNLTPFENDLIKLGLMRRIPLLSFH* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2349 162 SUPERFAMILY beta-beta-alpha zinc fingers 41 112 IPR036236 -
Amo17g2349 162 Gene3D Classic Zinc Finger 36 127 - -
Amo17g2349 162 PANTHER ZINC FINGER PROTEIN ZAT5 5 154 - -
Amo17g2349 162 Pfam C2H2-type zinc finger 40 66 - -
Amo17g2349 162 Pfam C2H2-type zinc finger 90 113 - -
Amo17g2349 162 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Amo17g2349 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Amo17g2349 162 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 5 154 - -
Amo17g2349 162 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Amo17g2349 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Amo17g2349 162 SMART c2h2final6 41 63 IPR013087 -
Amo17g2349 162 SMART c2h2final6 90 112 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2349 Amo-Chr17 118794664 118795281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2349 1 156 C2H2 Transcription Factor Family AT2G28710 45.087 4.53e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo17g2349 zf-C2H2_6 1.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2349 - - vra:106758971 175.637