Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2348 ATGGACGGAGCAGGAGGACTTGAAGTTAGTTTCATTTGTGGGGCTGTTTGGAGACAGGAAATGGGACTTTATAGCAAAGGTTTCAGGTTTGAAGGTGGCGGGAGACACTTGATAGGTAATGCTTATTTGGGCATGATGCTTTTTGAAACCGCCACTCCCTTTAACCACCCAATTCTATATRTTTTYGTTGTAGGTCTCAATCGAACTGGTAAGAGCTGCCGCCTCCGCTGGGTTAACTACCTCCACCCCGGCCTCAAACGTGGCAAGCTCACTCCCTTTGAAGAGAAGCTTGTCTTGGACCTCCACTCCAAGTGGGGCAATAGATGGTCAAGAATTGCTCGCAAGCTGCCCGGGCGCACGGACAACGAGATCAAGAATTACTTTAGRACTCACATGAGGAAGAAGGCTCAAGAGGAGAAGCGCGCGCTTGCATCACCAAGTTCTTCAAGCTGCCATTCCTCACTCTCTTCAAACAACAACAACAACCAAGCTGTTGATTCRCATGCTTCCAAGAAAGCTGGAGAAGAGAGCTTCTATGACACAGGGGGGCCGGTCATGACTGTGGACTGCTCAACCGATTTGAAGGAAGAAGAAGGGTTCTCCATGGATGATATATGGAAAGATATTGAGCTTTGTGAAGAGAAGAACATTGTTGTTTATGATGGGAATAAGAGTGAAGAGGGTTGCAACTTCTCAAGTCCACCATCATGGGAGTATTCTTCTGACCCACTTTGGGTGATGGATGAACAAAGTGTGTTATTCCCAACTAGTGACCCATATTTTTCCTCATTTCTAACTGGCTAA 804 0.4639 MDGAGGLEVSFICGAVWRQEMGLYSKGFRFEGGGRHLIGNAYLGMMLFETATPFNHPILYXFVVGLNRTGKSCRLRWVNYLHPGLKRGKLTPFEEKLVLDLHSKWGNRWSRIARKLPGRTDNEIKNYFRTHMRKKAQEEKRALASPSSSSCHSSLSSNNNNNQAVDSHASKKAGEESFYDTGGPVMTVDCSTDLKEEEGFSMDDIWKDIELCEEKNIVVYDGNKSEEGCNFSSPPSWEYSSDPLWVMDEQSVLFPTSDPYFSSFLTG* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2348 267 SUPERFAMILY Homeodomain-like 67 137 IPR009057 -
Amo17g2348 267 CDD SANT 94 132 IPR001005 -
Amo17g2348 267 MobiDBLite consensus disorder prediction 142 168 - -
Amo17g2348 267 MobiDBLite consensus disorder prediction 138 180 - -
Amo17g2348 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Amo17g2348 267 PANTHER TRANSCRIPTION FACTOR MYB48-LIKE ISOFORM X1 2 257 - -
Amo17g2348 267 Gene3D - 89 174 - -
Amo17g2348 267 Pfam Myb-like DNA-binding domain 87 131 IPR001005 -
Amo17g2348 267 Gene3D - 47 86 - -
Amo17g2348 267 SMART sant 86 134 IPR001005 -
Amo17g2348 267 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Amo17g2348 267 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 257 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2348 Amo-Chr17 118764904 118766900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2348 21 248 MYB Transcription Factor Family AT3G46130 51.489 5.19e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo17g2348 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2348 K09422 - jre:109021960 263.077