Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2322 ATGAGGAGGTGCGGCTATTCTGCTGTGAATGCAATGTCCGAGGGTGCGGAGGTCAATGAGCGTGTCGACATTGATGAGGAGAATTATATGGAAGAGATTGATGATGATGTTGAAGAACAGATAGATGACCATGGACAAGAAGCACCTGAACCTCCACATGAACACAAGGGGTCACCTGCTGAGGCTGCTGCTAAAGATCAGTTGCCTGAACAAGAACAAGAAAGAAGTGACACTGCTGCTGAAATTCTCCAAGATGGGCAGAAACCATCTTCTGTCAATGAAGATGAGGAGAAGGAAAAGCATGATGAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAGTCTTCATTGGTGGGCTTCCTCGCGATGCCAATGAAGATGATTTGAAGGCATTGTGCGAGCCAATGGGTGACGTTCTAGAGGTGCGACTAATGAAGGACAAGGACACCGGCGAAAACAGGGGTTATGCTTTTGTGGCTTTTAAAACAAAGGAGGTAGCACAAAAGGCCATTGAAGACATACACAACAAGGAATTTAAGGGCAAAACCTTGAGGTGTTCACTGTCTGAAACAAAACACAGATTGTTCATTAGTAACATTCCAAAGACTTGGACGGAGGATGAGTTCAGGAAACATGTCGAGGCTGTTGGTCCGGGTGTTGAAAACATCGAGCTCATCAAGGACCCCCAAAACCCCACTAGGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGACTATTCGCGGCAAAAGATGTCAATTGCAAGTTTTAAGCTGGGTGGTAATACCCCAAATGTCACATGGGCAGATCCAAAGATCTCACCTGATCATTCTTCATCTTCACAGGTTAAAGCTCTATATGTTAAAAACATACCTGAGAATGTTACTACTGAACAACTAAAAGAACTATTCCGGCGACATGGAGAAGTGACAAAAGTGGTCATGCCACCTGGTAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGCGGTCAAGTGTATTGAAAGCTGTCAAAGATACAGAGAAATATGAAATTAATGGCCAAGTGCTTGAAGTTGTTCTTGCCAAGCCTCAAACTGATAGAAAAGCTGAAGTTAGTTATGCCTACAATCCTGTACTTCATCCAAGCCATCTTATACATCCCGGATATGGTAGTTTTTCTGGAAATCTTTACGGCTCTTTAGCTGCAGGATATGGTGTTGCTACAGACGGTCAAATCGGCTATGTCCTTCAACAGCCTGGTGTACAGGCACCACCGGCCCGACCTCGCAGAACTGATCGGAACAATGGTCCAAGTGGTCAACCGGGCCGAGCAGGAGGTGGTGGCAGCGAAGAAAGCAACCGTAATAGAAGCAAAAATGATMTCTGA 1389 0.4478 MRRCGYSAVNAMSEGAEVNERVDIDEENYMEEIDDDVEEQIDDHGQEAPEPPHEHKGSPAEAAAKDQLPEQEQERSDTAAEILQDGQKPSSVNEDEEKEKHDELLALPPHGSEVFIGGLPRDANEDDLKALCEPMGDVLEVRLMKDKDTGENRGYAFVAFKTKEVAQKAIEDIHNKEFKGKTLRCSLSETKHRLFISNIPKTWTEDEFRKHVEAVGPGVENIELIKDPQNPTRNRGFAFVLYYNNACADYSRQKMSIASFKLGGNTPNVTWADPKISPDHSSSSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSVLKAVKDTEKYEINGQVLEVVLAKPQTDRKAEVSYAYNPVLHPSHLIHPGYGSFSGNLYGSLAAGYGVATDGQIGYVLQQPGVQAPPARPRRTDRNNGPSGQPGRAGGGGSEESNRNRSKNDX* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2322 462 MobiDBLite consensus disorder prediction 417 462 - -
Amo17g2322 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 364 IPR000504 GO:0003723
Amo17g2322 462 MobiDBLite consensus disorder prediction 90 107 - -
Amo17g2322 462 SUPERFAMILY RNA-binding domain, RBD 192 367 IPR035979 GO:0003676
Amo17g2322 462 SUPERFAMILY RNA-binding domain, RBD 107 191 IPR035979 GO:0003676
Amo17g2322 462 CDD RRM_SF 114 186 - -
Amo17g2322 462 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 410 458 - -
Amo17g2322 462 Gene3D - 19 192 IPR012677 -
Amo17g2322 462 PANTHER GEO13361P1-RELATED 13 409 - -
Amo17g2322 462 Gene3D - 193 273 IPR012677 -
Amo17g2322 462 MobiDBLite consensus disorder prediction 24 43 - -
Amo17g2322 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 274 IPR000504 GO:0003723
Amo17g2322 462 Gene3D - 275 374 IPR012677 -
Amo17g2322 462 SMART rrm1_1 193 270 IPR000504 GO:0003723
Amo17g2322 462 SMART rrm1_1 113 186 IPR000504 GO:0003723
Amo17g2322 462 SMART rrm1_1 288 360 IPR000504 GO:0003723
Amo17g2322 462 MobiDBLite consensus disorder prediction 44 81 - -
Amo17g2322 462 PANTHER GEO13361P1-RELATED 410 458 - -
Amo17g2322 462 SMART rrm2_1 113 186 IPR003954 GO:0003676
Amo17g2322 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 289 357 IPR000504 GO:0003723
Amo17g2322 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Amo17g2322 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 255 IPR000504 GO:0003723
Amo17g2322 462 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 13 409 - -
Amo17g2322 462 CDD RRM3_hnRNPR_like 286 364 - -
Amo17g2322 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Amo17g2322 462 MobiDBLite consensus disorder prediction 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2322 Amo-Chr17 117636966 117640745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2322 114 382 Eukaryotic Initiation Factors Gene Family AT1G22760 27.907 4.22e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2322 K13161 - gmx:100790907 682.174