Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2284 ATGTACCACCCTTCATATATTCTTGACTTTGCCTCCCAAACCCTGCACCCCATCCAGCTACTCTTTCTTTTTTCTCCACATTTTTTAATTGATATTTTCATTACTAGAGGGAGACCAAAAGCGTGTTTGAAACCTCATTCTCCACATTCTCCAATTATAAGCCACCTCATAGATCCCAAAATTCAAACCCAGCTCAGAGTCTCACACCCACACGCCATTTTCCATTCTCAAAAGATTAACAAAACTATGCAATCTAGATTAACAAAACCAAAAACATTACTACTCTTCTTCGCAGGTCTCTTATTGCTTCCATGTTCATGTTTATGCTCTTCCACCACCAACAAAGCCAAAAACGCCACCATTATTCCCCATCAGTTTAAGGAAGCACCTCAATTCTACAACTCCCCGGACTGCCCCTCCGTCATGGACACCGACAGCGATGACACTAACACCGATACGGACACGGACACGTACATATGCTCGGAAGAAGCAGTACACGTGGCAATGACTCTAGACACAACATACATCCGAGGATCCATGGCTGCAATCCTTTCAGTCCTCCAACACTCTTCCTGCCCACAAAACATCTTCTTCCACTTCGTCTGCTCCTCCAACGCGTCACTCCTACGCGCCGCCATCTCCAACTCCTTCCCTTACCTCAAGTTCCACCTCTATCATTTTGACAACGCCACCGTCTCCGGCCTCATCTCCACCTCAATCCGCTCCGCACTTGACTGCCCTCTTAACTACGCCCGCAGCTACCTTGCCAATCTCCTTCCACTCTGCGTCCGCCGCGTCGTCTACTTGGACTCCGACCTCATACTCGTCGACGACATTGCGAAACTCGCAGCCACCCCACTAGGCCAAACGGCGGTTCTTGCAGCGCCGCAATACTGCAACGCGAATTTCACAGCGTACTTCACACAAACATTCTGGTCGAATCCTTCTCTGTCGCTTACATTCGCGAACAGAGAGCCTTGCTACTTCAACACAGGGGTCATGGTGATCGATCTGGATCGGTGGCGCCATGGGGATTACACGAGGAAGATCGAGGAGTGGATGGAGGTGCAGAAGAGGACGAGGATCTACGAGCTTGGTTCTCTGCCACCGTTTCTTCTTGTTTTCGCTGGAAATATTGCTACCGTGGATCATAGGTGGAACCAGCATGGTTTGGGTGGTGACAATTTTCGTGGTTTGTGCAGAGATCTGCATCCTGGTCCTGTGAGTTTGTTGCATTGGAGTGGCAAAGGTAAGCCATGGGTGAGGTTGGACGCTAATAGGCCTTGCCCTTTGGATGCTCTTTGGGCACCTTATGATTTGTTGCTCACTCCATTTTCTCTTGATTCTTGA 1350 0.4896 MYHPSYILDFASQTLHPIQLLFLFSPHFLIDIFITRGRPKACLKPHSPHSPIISHLIDPKIQTQLRVSHPHAIFHSQKINKTMQSRLTKPKTLLLFFAGLLLLPCSCLCSSTTNKAKNATIIPHQFKEAPQFYNSPDCPSVMDTDSDDTNTDTDTDTYICSEEAVHVAMTLDTTYIRGSMAAILSVLQHSSCPQNIFFHFVCSSNASLLRAAISNSFPYLKFHLYHFDNATVSGLISTSIRSALDCPLNYARSYLANLLPLCVRRVVYLDSDLILVDDIAKLAATPLGQTAVLAAPQYCNANFTAYFTQTFWSNPSLSLTFANREPCYFNTGVMVIDLDRWRHGDYTRKIEEWMEVQKRTRIYELGSLPPFLLVFAGNIATVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWVRLDANRPCPLDALWAPYDLLLTPFSLDS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2284 449 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 166 429 IPR029044 -
Amo17g2284 449 Pfam Glycosyl transferase family 8 166 422 IPR002495 GO:0016757
Amo17g2284 449 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 101 449 - -
Amo17g2284 449 SUPERFAMILY Nucleotide-diphospho-sugar transferases 165 440 IPR029044 -
Amo17g2284 449 PANTHER HEXOSYLTRANSFERASE 101 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2284 Amo-Chr17 116584249 116586079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2284 114 449 Glycosyltransferase AT1G19300 75.444 6.85e-175 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2284 K20893 - gmx:100818099 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2284 17 116584249 116586079 Amo17g2284 17 116584249 116586079 ECH
Amo16g3931 16 151113623 151114854 Amo17g2284 17 116584249 116586079 PCT
Amo17g2284 17 116584249 116586079 Amo16g3931 16 151113623 151114854 PCT