Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2282 ATGGCAAGTGGGTTTGGGGAATCAACGAGCAAGTCTCCCCCAAGCCCTTCGTACTCGAACAACAGCAATAACAACAATGATGCTGGCAATTTTGAATGCAACATATGCTTCGATTTAGCACAAGACCCAATTATCACTTTGTGTGGCCACCTCTTCTGCTGGCCATGTCTCTACAAGTGGCTTCACCTCCACTCGCAATCGCAAGAATGCCCCGTCTGCAAGGCCGCCATTGAGGAGGAGAAGCTGGTTCCATTGTATGGGAGAGGGAAGACATCAACTGACCCGAGATCAAAAACTATTCCGGGTCTTAATATCCCTCATCGTCCTACCGGTCAGAGACCTGAAACTGCAGCTCCTCCTCCCGAAGCAAACCATTTTCATCAACATGGATTTGGTCTAATGGGTGGCTTGGGAGGCTTTGCACCAATGGCGACTGCAAGATTTGGGAATTTCACCTTGTCTGCGGCATTTGGTGGTTTTATACCATCCTTGTTCAACTTTCAATTGCACGGATATCATAATGGGTCCATGTATGGTGGAGCAGCTGGTTATCCTTATGGATACTCTAATTCATTTCACGGTGTCCATGCTCATAGATATCCTCTGCATGCTGGTCAAGGGCAACAAGATTATTACCTGAAGAGGCTCCTTCTGTTTGTCGTCTTCTTTGTTGTCCTTGCTTTTATCTGGCAATAG 696 0.4698 MASGFGESTSKSPPSPSYSNNSNNNNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHLHSQSQECPVCKAAIEEEKLVPLYGRGKTSTDPRSKTIPGLNIPHRPTGQRPETAAPPPEANHFHQHGFGLMGGLGGFAPMATARFGNFTLSAAFGGFIPSLFNFQLHGYHNGSMYGGAAGYPYGYSNSFHGVHAHRYPLHAGQGQQDYYLKRLLLFVVFFVVLAFIWQ* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2282 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 231 IPR045103 GO:0005783|GO:0006511|GO:0061630
Amo17g2282 231 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Amo17g2282 231 SMART ring_2 33 73 IPR001841 -
Amo17g2282 231 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Amo17g2282 231 MobiDBLite consensus disorder prediction 87 122 - -
Amo17g2282 231 SUPERFAMILY RING/U-box 30 86 - -
Amo17g2282 231 MobiDBLite consensus disorder prediction 1 23 - -
Amo17g2282 231 CDD RING-HC_AtRMA_like 31 75 - -
Amo17g2282 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 87 IPR013083 -
Amo17g2282 231 PANTHER OS12G0636000 PROTEIN 2 231 - -
Amo17g2282 231 Pfam Zinc finger, C3HC4 type (RING finger) 31 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2282 Amo-Chr17 116547274 116549089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2282 31 214 C3H Transcription Factor Family AT1G19310 67.196 7.42e-88 257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2282 17 116547274 116549089 Amo17g2282 17 116547274 116549089 ECH