Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2272 ATGGTAATTTCAGGGGTGAGAAAGACTTTGAATTCAGAACTGTGGCATGCTTGTGCTGGCCCTCTTGTATCTTTGCCTCAAGTGGGAAGTCTTGTTTATTACTTTTTCCAGGGACATAGTGAGCAGATTGCAGCATGGAATTGGTTTAGGTCCTATGTGCTGTATCTTTCTCATCCTAGTGCTCCTATATTGCTATTGTCATTCTTTGGAAACTTGAGTGGAAACAGCATTCGTGGAGCTATTCCATCTGCACTTGGAAAAGTAACTAACTTGCAAGTGCTGAACCTTAATGGCGACTTCTTGTCTGGAAGGGTCCCAGCAACTCTAGGAGGAAGACTTCTACACAGAGCTAGTTTCAATTGCATTCACCAACAACTATTTCTACAAGACAATGGCAGCACTGAATTTATGTAA 414 0.4203 MVISGVRKTLNSELWHACAGPLVSLPQVGSLVYYFFQGHSEQIAAWNWFRSYVLYLSHPSAPILLLSFFGNLSGNSIRGAIPSALGKVTNLQVLNLNGDFLSGRVPATLGGRLLHRASFNCIHQQLFLQDNGSTEFM* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2272 137 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 45 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo17g2272 137 Gene3D Ribonuclease Inhibitor 53 120 IPR032675 -
Amo17g2272 137 SUPERFAMILY L domain-like 53 111 - -
Amo17g2272 137 PANTHER AUXIN RESPONSE FACTOR 5 4 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2272 Amo-Chr17 116236190 116238169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2272 4 73 B3 DNA Binding Superfamily AT1G19850 54.930 2.14e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2272 K14486 - gmx:100790289 85.8853