Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2267 ATGACGACGGAGCCACCACCAATGCCACTTTCCGGCGAGGAAGCCGCCACCTTATCGGCTTTGGACTTAGAAACCGCACCTCAACCACCCGCCCCGCCCCTAAAAAAGAAGCGAAACCTCCCTGGAATGCCAGATCCGGATGCTGAAGTGATTGCTTTGTCGCCAAAGACGCTGTTAGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAGGGGTTCCAGAGGGACCAGAACCTCCAGCTCCACCGGCGGGGACACAACCTCCCGTGGAAGCTCCGGCAGCGTGCCACCAAGGAGGTAAGAAAGAGGGTGTACGTGTGCCCCGAACCTTCGTGTGTCCACCACAATCCTTCCAGGGCGCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGCTCAAATGCGAACGTTGCTCAAAGAAATACGCCGTTCARTCCGATTGGAAGGCACACATGAAGACCTGCGGAACCAGAGAGTACAGATGCGGTTGCGGAACCTTGTTCTCTAGGAGGGATAGCTTTGTTACGCATAGAGCTTTTTGCGATGCGTTAGCTGAAGAGAGTGCTAAGGCTCAAACCCTAAGCACTGATGACAAGGACGGTGTTGGTGCTGGTGCTGGTGCTGGTGTGACTGCGGCTTCTTCTTCATCGCCGCCGCAGCCRCCGCTTACTCCGTCGACTTCGGTGGTGTCTCCGACTCTGTCAATTCAGAGCTCAGAAATTCCGGAAAATGCGACGAGGCTGTCACCGCCAACAACGTGTGTTGCGAAAGCTGTGACAACTAGCACTGTTCTTGCAACTGTGTTGGCATCCTCAGCCGGAGCAGCAGCACCATCAACCACCTCATTCCCCAACGTCACGGCAGCCACGTCACTCTCCCTCTCCGTGCCACTCTATCTCTCCAACAACGTTAACGACCCTCGCCATCACTACACTGCATGTCCACAGCCATCAACAACAGCTGCACTGTCTGCCACCGCATTGCTCCAGAAGGCAGCTCAAATGGGTGCAGCTTCTTCCAACACGTCGCTTCTTCGAGGTTTAGGCTTAGCCACGTCATCTACGGGATATCATCCTCAAGACGAGAGCGGCATTGAGAACCCAATAATGCAATGGAACATGAGCAGCCATGTGAAGCAAGAGAATCCGAGTTTGGCAGATCATAACCTTGGGCTTGGACTTCCATGTGGGGATCCGGGTTTTGCAGATGTGATGATGGGGTCCCCTCCCATGACCCGGGATCTTCTTGGTCTTGGGATCGGTGGCAATGGCGGTGATAATGTTAGCAGGGGTGGTCTTTCTGCTTTGTTAACCTCTTTTGGAGGGAACTTCGATTCATCTGGAGATGCAGGTGGAGTTCGCCACCAGTAG 1392 0.546 MTTEPPPMPLSGEEAATLSALDLETAPQPPAPPLKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRATKEVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKLKCERCSKKYAVQSDWKAHMKTCGTREYRCGCGTLFSRRDSFVTHRAFCDALAEESAKAQTLSTDDKDGVGAGAGAGVTAASSSSPPQPPLTPSTSVVSPTLSIQSSEIPENATRLSPPTTCVAKAVTTSTVLATVLASSAGAAAPSTTSFPNVTAATSLSLSVPLYLSNNVNDPRHHYTACPQPSTTAALSATALLQKAAQMGAASSNTSLLRGLGLATSSTGYHPQDESGIENPIMQWNMSSHVKQENPSLADHNLGLGLPCGDPGFADVMMGSPPMTRDLLGLGIGGNGGDNVSRGGLSALLTSFGGNFDSSGDAGGVRHQ* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2267 463 MobiDBLite consensus disorder prediction 1 46 - -
Amo17g2267 463 Gene3D Classic Zinc Finger 117 199 - -
Amo17g2267 463 Gene3D Classic Zinc Finger 44 110 - -
Amo17g2267 463 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 298 - -
Amo17g2267 463 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 317 455 - -
Amo17g2267 463 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Amo17g2267 463 Pfam Zinc-finger of C2H2 type 64 86 - -
Amo17g2267 463 SMART c2h2final6 64 86 IPR013087 -
Amo17g2267 463 SMART c2h2final6 105 135 IPR013087 -
Amo17g2267 463 SMART c2h2final6 140 160 IPR013087 -
Amo17g2267 463 MobiDBLite consensus disorder prediction 199 239 - -
Amo17g2267 463 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 317 455 - -
Amo17g2267 463 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 22 298 - -
Amo17g2267 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Amo17g2267 463 SUPERFAMILY beta-beta-alpha zinc fingers 63 161 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2267 Amo-Chr17 116082967 116086857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2267 35 446 IDZ Gene Family AT5G66730 51.915 3.73e-128 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo17g2267 zf-met 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2267 K25869 - gmx:100818095 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2267 17 116082967 116086857 Amo17g2267 17 116082967 116086857 ECH
Amo08g0014 08 574874 578931 Amo17g2267 17 116082967 116086857 hybridization