Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2258 ATGGGGAGGAGACCTGCGAGGTGTTATCGACAAATTAAAAACAAGCCATACCCCAAGTCACGGTTTTGCCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTAGGTATGAAGAAGAAGGGTGTGGATGAGTTCCCCTTCTGTGTCCACCTTGTTAGTTGGGAGAAGGAAAATGTCTCAAGTGAGGCACTGGAAGCTGCTAGGATTGCCTGCAACAAGTATATGGCTAAGTTTGCTGGAAAGGATGCTTTCCATTTGAGAGTGAGGGTTCATCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCYTGTGCTGGAGCCGATAGGCTTCAAACTGGAATGAGAGGTGCATTTGGAAAGCCCCAGGGKACATGTGCTAGGGTGGCCATTGGMCAGGTCCTTCTTTCTGTTCGTTGCAAGGACAGTAACAGTCATCACGCACAGGAGGCTCTCCGCCGTGCTAAGTTCAAGTTCCCTGGTCGCCAGAAGATTATTATTAGCAGGAAGTGGGGATTCACCAAGTTCAGCCGAGCTGACTATCTGAAGTTTAAGCAGGAAAATAGGATTATGCCTGATGGTGTGAATGCAAAGCTTCTTGGGTGCCATGGACCATTGGCTAACCGTCAACCTGGAAGAGCATTTTTGCAAACCAGTGCTACTGCTTAG 669 0.4738 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIISRKWGFTKFSRADYLKFKQENRIMPDGVNAKLLGCHGPLANRQPGRAFLQTSATA* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2258 222 Gene3D Ribosomal protein L10e/L16 1 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
Amo17g2258 222 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Amo17g2258 222 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Amo17g2258 222 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 218 - -
Amo17g2258 222 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Amo17g2258 222 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Amo17g2258 222 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Amo17g2258 222 PANTHER 60S RIBOSOMAL PROTEIN L10 1 218 IPR001197 GO:0003735|GO:0005840|GO:0006412
Amo17g2258 222 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2258 Amo-Chr17 115789515 115791879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2258 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.909 5.22e-144 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2258 K02866 - gmx:100305619 447.588