Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2229 ATGGAATCTCCAAATCTCCATCAACATCCTTCTTCATCTTCCTCATCATCATCATATGGATCCACCACCCACCATTCTTGGACTCCAAATATCACTTTCCACATCCAAGAAGATAACAATAATAATATTAATATTGGGGTCCCTCTCATCCAAGATCATCACCATCACTTATGGACGACAACTACAACAACTACTAGTAGTGGTGATGATAATACTGCACAACCAAGCTGCTTAAGCTTAAACACCACCAACCACATCACTATTAATCATAATATGCTAAACTCTCATACACCTCCTCCTCCTTCTTCAACCGTCGAATTCTCAACACACGATGATGACAAGCTCTTGCTCAAGACGTTTTTCTCTGCGCAAGATTTCTACTCCAATAACAATACTACTTTCTGTGGAGTACCTTCTAGTAGTAGACGAAACTTTAGTCACATTTATCCCACCATAAATATCTCTAATAATATCAACAACCACTCATCACCATCACCATCATCTTCTAGTAATAATATGACCTCGCACTCCTTCGATCTACCAGCTTTCATGACAACTACCACTCATGGCGGCGGTGCTGCTGCACATCAACAAGTAGATCTTGGTCTTGCTACATTTTCCGACAACCATCTTTCTTTTCATCTTGATCATCATCATAGCCAGCACCACCGCCCTACTCACGCCTCCTCGCCGCCCTGCAGTAACTCTACTACTTCCACTACTGCTAATAATAACAGTCATCCATCACAATACTTCTCCAATGGCACTGTGGACACAAAGAGACCCTGCACTTCGATAATGGACACAAAGGCTTCTCAATCTCTAACAGCATCCAAGAAATCACGATCCGAATCGCGCCCTTCATGCCCTCCCTTTAAGGTTAGGAAAGAGAAATTAGGAGATAGGATTGCGGCTCTTCAACAGTTGGTGGCTCCTTTTGGTAAGACCGACACAGCATCCGTACTTATGGAAGCAATCGGATACATAAAATTCCTTCAAAGCCAAGTAGAGACACTGAGCGTTCCATACATGAAGCCAACACAGAACCAAACCAACTCCAGAATGATGCAAGGGGTTTCAACCATAGGCGGCGGAAATGGGGAACCAAAGCAAGACCTTCGAAGTCGAGGCCTTTGTCTGGTGCCATTATCATGCATGTCTTACATAGCAGGTGATGCCAGCAATGACGCGTGGCAACAATCAAACTTTGGAGGAGCAACTTAG 1224 0.4363 MESPNLHQHPSSSSSSSSYGSTTHHSWTPNITFHIQEDNNNNINIGVPLIQDHHHHLWTTTTTTTSSGDDNTAQPSCLSLNTTNHITINHNMLNSHTPPPPSSTVEFSTHDDDKLLLKTFFSAQDFYSNNNTTFCGVPSSSRRNFSHIYPTINISNNINNHSSPSPSSSSNNMTSHSFDLPAFMTTTTHGGGAAAHQQVDLGLATFSDNHLSFHLDHHHSQHHRPTHASSPPCSNSTTSTTANNNSHPSQYFSNGTVDTKRPCTSIMDTKASQSLTASKKSRSESRPSCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQSQVETLSVPYMKPTQNQTNSRMMQGVSTIGGGNGEPKQDLRSRGLCLVPLSCMSYIAGDASNDAWQQSNFGGAT* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2229 407 CDD bHLH_AtbHLH_like 290 340 IPR045239 -
Amo17g2229 407 PANTHER OS01G0105700 PROTEIN 64 392 - -
Amo17g2229 407 MobiDBLite consensus disorder prediction 216 293 - -
Amo17g2229 407 Gene3D - 293 357 IPR036638 GO:0046983
Amo17g2229 407 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 64 392 - -
Amo17g2229 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 283 332 IPR011598 GO:0046983
Amo17g2229 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 293 346 IPR036638 GO:0046983
Amo17g2229 407 MobiDBLite consensus disorder prediction 1 23 - -
Amo17g2229 407 MobiDBLite consensus disorder prediction 226 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2229 Amo-Chr17 114522616 114526086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2229 91 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 45.912 2.03e-56 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2229 - - aip:107610095 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2229 17 114522616 114526086 Amo17g2229 17 114522616 114526086 ECH