Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2225 ATGGCTTCATCGAGCGGAAACTCGACCCTTCAAAGCTCGGGTTCGGAGGAGGATATGTTGTTGATGATGATGGATGAAAGGAAGAAGAAGAGGAAGCAATCGAATAGGGAATCAGCAAGAAGATCAAGGATGAGGAAACAGAATCACATGGATGATCTTATGAGTGAGGTATGCAAGCTTGGAAAGGAAAAGAGTGAAATCCTTAAAGGCATAGACATCACCACACAGCAATATTTGTGTGTTGAGTCTCAAAATTCAATCCTTAGGGCCCAGTTGGAAGAACTTTCTCAGAGGCTTCAATCACTCAATCATATCGTTCATCTCATCAACACAACACCACCTAATCTGCCCTTTCATCATCATCATACACAAACACAATATGATTATCTTCTGCCACCAACACCAGCTGCTGAAAATTTCTTCACCAATAATATGAATATGTTCAATCATATCAACCAACCAATTTCAGCTTCTGCTGCAGACATTTATCAGTGA 495 0.4061 MASSSGNSTLQSSGSEEDMLLMMMDERKKKRKQSNRESARRSRMRKQNHMDDLMSEVCKLGKEKSEILKGIDITTQQYLCVESQNSILRAQLEELSQRLQSLNHIVHLINTTPPNLPFHHHHTQTQYDYLLPPTPAAENFFTNNMNMFNHINQPISASAADIYQ* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2225 164 MobiDBLite consensus disorder prediction 1 51 - -
Amo17g2225 164 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 25 88 IPR004827 GO:0003700|GO:0006355
Amo17g2225 164 SMART brlzneu 23 87 IPR004827 GO:0003700|GO:0006355
Amo17g2225 164 Coils Coil 78 105 - -
Amo17g2225 164 CDD bZIP_plant_GBF1 28 78 IPR045314 GO:0003700|GO:0006355
Amo17g2225 164 PANTHER BZIP TRANSCRIPTION FACTOR 1 159 - -
Amo17g2225 164 SUPERFAMILY Leucine zipper domain 27 81 IPR046347 GO:0003700|GO:0006355
Amo17g2225 164 MobiDBLite consensus disorder prediction 1 16 - -
Amo17g2225 164 Pfam bZIP transcription factor 27 71 IPR004827 GO:0003700|GO:0006355
Amo17g2225 164 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 159 - -
Amo17g2225 164 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 30 45 IPR004827 GO:0003700|GO:0006355
Amo17g2225 164 Gene3D - 25 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2225 Amo-Chr17 113698471 113700064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2225 23 159 bZIP Transcription Factor Family AT4G34590 46.763 4.02e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo17g2225 bZIP_1 5.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2225 K25786 - adu:107460079 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2225 17 113698471 113700064 Amo17g2225 17 113698471 113700064 ECH
Amo13g0776 13 9625663 9627276 Amo17g2225 17 113698471 113700064 ECH