Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Amo17g2225
ATGGCTTCATCGAGCGGAAACTCGACCCTTCAAAGCTCGGGTTCGGAGGAGGATATGTTGTTGATGATGATGGATGAAAGGAAGAAGAAGAGGAAGCAATCGAATAGGGAATCAGCAAGAAGATCAAGGATGAGGAAACAGAATCACATGGATGATCTTATGAGTGAGGTATGCAAGCTTGGAAAGGAAAAGAGTGAAATCCTTAAAGGCATAGACATCACCACACAGCAATATTTGTGTGTTGAGTCTCAAAATTCAATCCTTAGGGCCCAGTTGGAAGAACTTTCTCAGAGGCTTCAATCACTCAATCATATCGTTCATCTCATCAACACAACACCACCTAATCTGCCCTTTCATCATCATCATACACAAACACAATATGATTATCTTCTGCCACCAACACCAGCTGCTGAAAATTTCTTCACCAATAATATGAATATGTTCAATCATATCAACCAACCAATTTCAGCTTCTGCTGCAGACATTTATCAGTGA
495
0.4061
MASSSGNSTLQSSGSEEDMLLMMMDERKKKRKQSNRESARRSRMRKQNHMDDLMSEVCKLGKEKSEILKGIDITTQQYLCVESQNSILRAQLEELSQRLQSLNHIVHLINTTPPNLPFHHHHTQTQYDYLLPPTPAAENFFTNNMNMFNHINQPISASAADIYQ*
165
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Amo17g2225
164
MobiDBLite
consensus disorder prediction
1
51
-
-
Amo17g2225
164
ProSiteProfiles
Basic-leucine zipper (bZIP) domain profile.
25
88
IPR004827
GO:0003700|GO:0006355
Amo17g2225
164
SMART
brlzneu
23
87
IPR004827
GO:0003700|GO:0006355
Amo17g2225
164
Coils
Coil
78
105
-
-
Amo17g2225
164
CDD
bZIP_plant_GBF1
28
78
IPR045314
GO:0003700|GO:0006355
Amo17g2225
164
PANTHER
BZIP TRANSCRIPTION FACTOR
1
159
-
-
Amo17g2225
164
SUPERFAMILY
Leucine zipper domain
27
81
IPR046347
GO:0003700|GO:0006355
Amo17g2225
164
MobiDBLite
consensus disorder prediction
1
16
-
-
Amo17g2225
164
Pfam
bZIP transcription factor
27
71
IPR004827
GO:0003700|GO:0006355
Amo17g2225
164
PANTHER
BZIP TRANSCRIPTION FACTOR 44
1
159
-
-
Showing 1 to 10 of 12 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Amo17g2225
Amo-Chr17
113698471
113700064
Dispersed/Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Amo17g2225
23
159
bZIP Transcription Factor Family
AT4G34590
46.763
4.02e-34
116
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Transcription factors information
Show
10
25
50
100
entries
Search:
Select
Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
bZIP
Amo17g2225
bZIP_1
5.5e-09
CL0018
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Amo17g2225
K25786
-
adu:107460079
281.952
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Event-related genes
Show
10
25
50
100
entries
Search:
Select
Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Amo17g2225
17
113698471
113700064
Amo17g2225
17
113698471
113700064
ECH
Amo13g0776
13
9625663
9627276
Amo17g2225
17
113698471
113700064
ECH
Showing 1 to 2 of 2 entries
Previous
1
Next
Select All
Download Selected Rows