Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2220 ATGATGTACAACAACAGCACTATTCCTAGTTGCAACTTTGGGAGTGATGCCTGTCTCATCAATCAAAAGAGTCCAATAGGCAAAGGTGAAGATCCGAATGCAAACTCGGAAGAAGAATTAGTTTCAGGCCAAATGGACTTCGACCTTTACTCAAGCGATAACGATGAAGAGTCATCAGAGATGTCGTTGGGTGTGTGTGGTTCTTTAAGTTCCTCTGAAGATGACGACAGTACTAGCTTATTTGGCATGGGAACAAGTCACTCTGAATCAAACAAAGAATTGCATCGCTTACAGGGGGATGTTCACGGCAAGGTGCCTGTGTTACTTACCGCAGAGGACTTCTTGCATATAGTTTTCACTTCTGAGGAGGAGGCCTACAATGCTTACAAGGAGTTTGCCTGGACAAGGGGGTTTGGTGTTCGCAAGGGGGACGTGGGATGGGTTGACGGTGTTTTGGTGAGGCAGGACATCTTCTGTCATCGTCAGGGCACGAGGAGTGACAAGCATTATGATAGGCCAGAACGAGTAAGGGAGGAGCGGCTGGAGAGTCGCACGGACTGCAAGGCAAAATTGAAAATATACTATGATGTCCATGATAATGTGTGGAGAGTGCGAAAGATTATTGATGAACACAACCACGACATGGCTCCGGCTGCGTTTTGCAACCTCTTGGACAGGGTCGTGAAAGACTATCGGAACAATGAGGTTACTGCACAATTTTACTCCACTTATTACACACCTGTGTTAAGTACTGGATTAGATGCAATAGAGTTGTCTGCGTCGAAGCTTTATACAAGAGCTGTTTTTAGGGAGGTTAAGAAGCAAATCAAGGGTGTTGCAACGCTATTGTTTCAGGGAAGGGAGAGCATCAACACGACCATTGTCTATAGCTTTAGTAAAATGGGTAGACCGGATCGGGTATTCAAGGTTCTCTATGATCCGAATGACCGAAAGATTGAGTGTGAGTGTAAGATGTGGGACAGTGATGGCATACCGTGTTCCCATATATTTTGTGTCATGAAGTACGAGGGTATGGAGGAAATTCCTGAAACACTTGTCCTTAGGCGCTGGTGTAAGATTGCAAAAGACTGTACAACATTGAAAACGGGGAATGATTCAAGGGATCAGGCAAGACTGCTGCGATACAGTGCATTATACTTAGCTTTGTCCCATGTTGTTACACTTGGGTGCGAAGAGGTTGAAGATTTTGCGCTTGCACATGATGCTATATCAAACCTGGTTGATATATTGCAACGGCGCCGTGTGGAAAAGGATGGTAACAAGGTTTTGCCCAACAACAAATGTGGGGTCAAAGACCCTACGATGGCAGCTACAAAGGGTGCACCGAAGAGGGGAAAAGCCAATTTATGTGCCTCCGAGGAGGAGCCGAAACTGAAGAGGCGTTGCACTAAGTGTGGGGTTCCCGGACATACAAGAAGAACATGTGCAGGCCACGATTTGAAGGCTGTACGAGTGGGATCAGAAGCAGCATCATCAGCTTTCGCCGAGTCTTCTTTTGCCCATGTAAAATCCACGGAACGATCCACGTCATTACGCAGGGAGGTCCCCTTCGAAGAGGGACCAAAGGTCACATCTAGCCGTAGCCAAGGAGGTGCACCATTAGGCATGACCCCTACTCAATCGAACGTGTCGCGGTTCGCACCTTCTGGAGGTGGAGGCAATATATTCTTGGGTGGGCAACGCATAGATCATTTTTATGCAACACCTACGTGTGGACCAACGTCATCCGTCCCGTGCTATTCTCCTTCTTTCGTCCCAGGTGTGATTCATAGCGGATCCCATGGTGCCTCGACAAGTCTTGGTAGCGAGGCAATTGAGAGGTGGATTCTGGAGAATGTAATTGGTCTAGGGTCTTCGGTGGAAAAGAATGGTGCTCTTCGATGA 1905 0.4724 MMYNNSTIPSCNFGSDACLINQKSPIGKGEDPNANSEEELVSGQMDFDLYSSDNDEESSEMSLGVCGSLSSSEDDDSTSLFGMGTSHSESNKELHRLQGDVHGKVPVLLTAEDFLHIVFTSEEEAYNAYKEFAWTRGFGVRKGDVGWVDGVLVRQDIFCHRQGTRSDKHYDRPERVREERLESRTDCKAKLKIYYDVHDNVWRVRKIIDEHNHDMAPAAFCNLLDRVVKDYRNNEVTAQFYSTYYTPVLSTGLDAIELSASKLYTRAVFREVKKQIKGVATLLFQGRESINTTIVYSFSKMGRPDRVFKVLYDPNDRKIECECKMWDSDGIPCSHIFCVMKYEGMEEIPETLVLRRWCKIAKDCTTLKTGNDSRDQARLLRYSALYLALSHVVTLGCEEVEDFALAHDAISNLVDILQRRRVEKDGNKVLPNNKCGVKDPTMAATKGAPKRGKANLCASEEEPKLKRRCTKCGVPGHTRRTCAGHDLKAVRVGSEAASSAFAESSFAHVKSTERSTSLRREVPFEEGPKVTSSRSQGGAPLGMTPTQSNVSRFAPSGGGGNIFLGGQRIDHFYATPTCGPTSSVPCYSPSFVPGVIHSGSHGASTSLGSEAIERWILENVIGLGSSVEKNGALR* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2220 634 MobiDBLite consensus disorder prediction 56 87 - -
Amo17g2220 634 Pfam SWIM zinc finger 308 336 IPR007527 GO:0008270
Amo17g2220 634 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 111 222 - -
Amo17g2220 634 ProSiteProfiles Zinc finger CCHC-type profile. 467 482 IPR001878 GO:0003676|GO:0008270
Amo17g2220 634 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 111 222 IPR031052 GO:0006355
Amo17g2220 634 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 225 399 IPR031052 GO:0006355
Amo17g2220 634 MobiDBLite consensus disorder prediction 512 542 - -
Amo17g2220 634 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 225 399 - -
Amo17g2220 634 MobiDBLite consensus disorder prediction 24 43 - -
Amo17g2220 634 SMART 26again6 319 346 IPR006564 GO:0008270
Amo17g2220 634 MobiDBLite consensus disorder prediction 513 527 - -
Amo17g2220 634 Pfam FAR1 DNA-binding domain 129 216 IPR004330 -
Amo17g2220 634 ProSiteProfiles Zinc finger SWIM-type profile. 308 344 IPR007527 GO:0008270
Amo17g2220 634 MobiDBLite consensus disorder prediction 52 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2220 Amo-Chr17 113561749 113565557 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo17g2220 FAR1 6.4e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2220 - - adu:107478967 493.812