Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2215 ATGAAAACCCGTCGGCCAGATTCCGTCATCTCCTTCTTCAAAGCCCACGGTTTCTCACTCTCCCAAATCACCACCATCATATGCAGGATTCCCGTGTTCCTCACATGCGACCCCACCAATGCAATCTTGCCAAAGTTTCAATTTTTAGCATCCAAAGGTGCTTCTCCCTCTGACATTGTACTCATGACCACAAGGAGTTCCCGCTTCCTGCTTCGAAGCCTTGACCATATAGTATCCTTGTACGAATTGGTAAGGAGGTTCTGTCCCTCTGATCTTAAAGCCATTGCTTATATAACTGCATGGCCATCATCCATTGCTGATGATCGTGTGGCTCAAAATGTGAAATTGCTGCTTGATGAAGGGTTGACCAATGCCAACATTCACCATTTGCTTAGAACTAGGCCTTCTGTGCTGTCCTCTGCTGATTTGAAGAAAACAGTTGAGGAAGTGAAGCAATTGGGGTTTGATCCTTCACACTCTTATTTCAGTGTGGTGTTGCTGACCAAAAGGGCCATAACTAAGTCCAAATGGGAGGCTAAAGTTGATGTCCTTAAGAAATGGGGCTGGTCCGAACAAGATTTTTCGGAGGCCTTTAGGAGGCACCCTAATTTTATGCTACGTTCCGAGGACAAACTCAACGCAGTGATGAGCTTTTGGATCAGTAATCTCGGCTGGGATTCTTCGGCGCTTCGCATTAGACCGATGCTTTTTGGATGCAGTTTGGAGAAGAGGCTTATTCCTAGAGCTAAGGTTGTCAAATATCTTCTCTCCAATGGTTTGATGAAGAAGAATGCTAGCATAATCACACCATTTTCTTTGACTGAGGAGCTGTTCCTCAAGAAGTGTGTCACATGTTTTGAGGAGAAAGATCGGTCTCGCCTATTAACACTATATCAAGGAGGATGTTTTGCTTCAAATTTGCAGCTTGCCATCTTCATCATAATGTCGGACGGCATCACCAAGCTCAAGAACATTCTAGAAGGCTTGCCTGAACCTCACTTCAGCTCCAAGGACCACATGATGCTTTACATCCTCCTCATGACTATTCCCAACAACTCTATGACAAGTACAAGGAGGTATTTGAAGAGTACATCCAATCAACGAGAGAAGCATGATGAATTTATGTTGAGAGAACTTGTAAAGAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTGTTGTTTCTTTCACTATTTGGATCGCTACTTTGTTGCCCGGAGGTCACTCCCACCCCTTAATGAAGTTGGGTTAACTTGCTTCCGTGATCGGGTTTACAAGGAGCTAAATGGGAAAGTTAGAGATGCAGTTATTTCTATTATTGATCAAGAACGTGAAGGAGAGCAGATTGATCGGGCTTTATTGAAGAATGTATTAGATATATTTGTTGAAATTGGGATGGGGCAAATGGATCACTATGAGAATGATTTTGAATTTGCAATGCTTAAAGACACCTCTGCTTATTACTCTCAAAAGGCTTCTAATTGGATCCTAGAAGATTCTTGTCCTGATTACACGCTCAAGGTTGAGGAGTGCTTAAAACAGGAGAAAGATAGGGTTGCTCATTATTTGCACTCCAGTAGCGAGCCAAAGTTGTTAGAGAAAGTTCAACATGAGCTGTTATCTGTGTATGCAAACCAACTCCTCCAGAAAGAGCACTCTGGATGTCATGCTTTGCTTAGAGATGACAATGTTGAAGATCTGTCACGGATGTTCAGGCTATTTTCTAAAATACCTGAAGGCTTAGATCCTGTTTCCAGTATATTTAAGCAGGATGTTATCACTGAAGGAATGGTATTGGTTAAGCAGGCTGAAGATGCAGCTAGTACCAAAAGGTTGGTCTGCAGGAGCAGGTTTGACTAA 1863 0.4283 MKTRRPDSVISFFKAHGFSLSQITTIICRIPVFLTCDPTNAILPKFQFLASKGASPSDIVLMTTRSSRFLLRSLDHIVSLYELVRRFCPSDLKAIAYITAWPSSIADDRVAQNVKLLLDEGLTNANIHHLLRTRPSVLSSADLKKTVEEVKQLGFDPSHSYFSVVLLTKRAITKSKWEAKVDVLKKWGWSEQDFSEAFRRHPNFMLRSEDKLNAVMSFWISNLGWDSSALRIRPMLFGCSLEKRLIPRAKVVKYLLSNGLMKKNASIITPFSLTEELFLKKCVTCFEEKDRSRLLTLYQGGCFASNLQLAIFIIMSDGITKLKNILEGLPEPHFSSKDHMMLYILLMTIPNNSMTSTRRYLKSTSNQREKHDEFMLRELVKRWANHKIMVRWLCCFFHYLDRYFVARRSLPPLNEVGLTCFRDRVYKELNGKVRDAVISIIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFEFAMLKDTSAYYSQKASNWILEDSCPDYTLKVEECLKQEKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLQKEHSGCHALLRDDNVEDLSRMFRLFSKIPEGLDPVSSIFKQDVITEGMVLVKQAEDAASTKRLVCRSRFD* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2215 620 Gene3D Cullin Repeats 546 616 - -
Amo17g2215 620 Pfam Cullin family 357 610 IPR001373 GO:0006511|GO:0031625
Amo17g2215 620 PANTHER CULLIN 3B 314 615 - -
Amo17g2215 620 SUPERFAMILY Cullin repeat-like 335 607 IPR016159 -
Amo17g2215 620 PANTHER CULLIN 314 615 IPR045093 -
Amo17g2215 620 SMART mt_12 227 261 IPR003690 GO:0003690|GO:0006355
Amo17g2215 620 SMART mt_12 195 226 IPR003690 GO:0003690|GO:0006355
Amo17g2215 620 SMART mt_12 128 156 IPR003690 GO:0003690|GO:0006355
Amo17g2215 620 SMART mt_12 24 55 IPR003690 GO:0003690|GO:0006355
Amo17g2215 620 Pfam mTERF 10 156 IPR003690 GO:0003690|GO:0006355
Amo17g2215 620 Pfam mTERF 106 278 IPR003690 GO:0003690|GO:0006355
Amo17g2215 620 Gene3D Cullin Repeats 317 424 - -
Amo17g2215 620 Gene3D Cullin Repeats 425 545 - -
Amo17g2215 620 Gene3D Transcription termination factor 3, mitochondrial 86 289 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2215 Amo-Chr17 113439815 113445556 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo17g2215 Cullin 5.6e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2215 K03347 - gmx:100793682 498.434