Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2188 ATGTTAAAAGTTTCTTTGGTAGGCACTACTATAAACATTGTTGGTCGTTTGACACTTCCTACCTTGACCCTGAGTGGGATCATTCCCAAGGTTGTTGTTGACTTACCATTGAATCCAATGACAGCTAAGTTTGTTTTTATCATATCTTCATCTGTCTTTTGGAACAAGGTGGTGTGTTTCTTTTTCTTGTATTTGTCTCTCAGACGATGTTGTTTGCTCACCGAAGATAACTTTGAGAAGGAGATATCAGATAGTGCTAAGAGCCTCGTGAGGCAGATGCTGGAGCCTGATCCTAAGAAGCGGTTGACAGCAGAGCAGAATGCAAAGAAAGCTTCAAATGTTCCGTTAGGAGATATTATGAGGACAAGGCTTAAGCAGTTCTCTGTGATGAACAGATTCAAAAAGAGAGCTCTTCAGGTGATTGCTGAACATTTATCTGTTGAAGAGGGCTTGGTCCCACTACCAGGATCAAACAATGAATCTTGGTGCCAAGGGCTAGATGGATTGGCTTCAAGTTCTGCTGAATACTACAAGCAAGGTGCTCGATTTGCCAGTGAATATAAGGAAGAGGGAATTGTCAGCTTGGGAAATCTCAAGACTTTCACATTCAGAGAGCTCCAACAGGCAACAGATAGTTTCAGTTCCAAGAACATACTTGGGGCTGGAGGTTTTGGCAATGTTCATAGGGAAAAACTTGCTGGTGACGGCTCTATGGTGGCAGTGAAAAGACTGAAGGATGTCATTGGAAGTTCTGGTGAATCACAGTTTCGAACAGAATTGGAGATGATCAGTTTGGCAGTTCATCGCAATTTACTTCGCTTAGTTGAATATTGTGCTACTCCTAATGAAAAGCTTCTGGTTTATCGTTATATGTCTAATGGCAGTGTGGGCATCCAGGCTTAG 903 0.4219 MLKVSLVGTTINIVGRLTLPTLTLSGIIPKVVVDLPLNPMTAKFVFIISSSVFWNKVVCFFFLYLSLRRCCLLTEDNFEKEISDSAKSLVRQMLEPDPKKRLTAEQNAKKASNVPLGDIMRTRLKQFSVMNRFKKRALQVIAEHLSVEEGLVPLPGSNNESWCQGLDGLASSSAEYYKQGARFASEYKEEGIVSLGNLKTFTFRELQQATDSFSSKNILGAGGFGNVHREKLAGDGSMVAVKRLKDVIGSSGESQFRTELEMISLAVHRNLLRLVEYCATPNEKLLVYRYMSNGSVGIQA* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2188 300 Pfam Protein kinase domain 214 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2188 300 SUPERFAMILY Protein kinase-like (PK-like) 198 295 IPR011009 -
Amo17g2188 300 SUPERFAMILY Aldolase 143 185 - -
Amo17g2188 300 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 185 297 - -
Amo17g2188 300 Gene3D Aldolase class I 133 185 IPR013785 -
Amo17g2188 300 ProSiteProfiles Protein kinase domain profile. 213 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2188 300 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 185 297 - -
Amo17g2188 300 Gene3D Phosphorylase Kinase; domain 1 186 290 - -
Amo17g2188 300 SUPERFAMILY Protein kinase-like (PK-like) 43 109 IPR011009 -
Amo17g2188 300 Pfam Fructose-bisphosphate aldolase class-I 141 184 IPR000741 GO:0004332|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2188 Amo-Chr17 112407073 112411378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2188 185 296 Receptor kinase-like Gene Family AT2G23950 75.000 5.86e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Amo17g2188 Pkinase 1.2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2188 - - aip:110270670 216.853