Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2185 ATGGCTCGAGGGAAGATCCAGATCAAGAGGATAGAGAACACTACCAACAGGCAAGTCACATACTCCAAACGACGCAATGGACTTTTCAAGAAGGCCAATGAACTCACCGTTCTCTGCGATGCTAAGGTTTCTATAATCATGTTCTCTAGCACTGGCAAACTCCATGAGTACATTAGCCCCTCCATCGCAACTAAGCAGTTCTTCGATCAGTATCAGATGACCGTAGGAATTGATCTCTGGAACTCCCACTATGAGCATATGCAAGAAAACTTGAGGAAGCTGAAAGATGTAAACAGGAATCTTCGCCAGGAGATTAGGCAGAGGATGGGAGATTGTCTGAACGATCTGGGCATAGAAGAGCTTAAACTCCTTGAGGAAGAAATGGACAAGGCCTCTAAGGTTATTCGTGAGCGTAAGTACAAGATGATCACAAATCAGATTGACCAGCACAGGAAGAAGTTTAACAACGAGAAAGAAGTGCACAACAGACTCCTGCGTGATTTAGATGCAAGAGCAGAAGATCCACGTTATGGATTGGTGGATAATGGAGAGTATGAATCTGTCATAGGATTCTCAAATTTAGGTCCTCGTATGTTTGCATTGAGCCTACAACCTAGCCATCCTAATGCACATAGCGGAGGAACAGCAGCCTCTGATCTTACCACTTACCCTTTACTTTTCTAG 684 0.4415 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSIATKQFFDQYQMTVGIDLWNSHYEHMQENLRKLKDVNRNLRQEIRQRMGDCLNDLGIEELKLLEEEMDKASKVIRERKYKMITNQIDQHRKKFNNEKEVHNRLLRDLDARAEDPRYGLVDNGEYESVIGFSNLGPRMFALSLQPSHPNAHSGGTAASDLTTYPLLF* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2185 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo17g2185 227 PANTHER APETALA3 1 224 - -
Amo17g2185 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 - -
Amo17g2185 227 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Amo17g2185 227 Coils Coil 151 171 - -
Amo17g2185 227 Coils Coil 84 107 - -
Amo17g2185 227 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Amo17g2185 227 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Amo17g2185 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo17g2185 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo17g2185 227 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo17g2185 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo17g2185 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo17g2185 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo17g2185 227 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo17g2185 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2185 Amo-Chr17 112137244 112142056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2185 1 226 MADS-box Gene Family AT3G54340 56.710 1.27e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo17g2185 K-box 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2185 K09264 - gmx:547720 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2185 17 112137244 112142056 Amo17g2185 17 112137244 112142056 ECH
Amo08g0152 08 2745457 2750055 Amo17g2185 17 112137244 112142056 hybridization