Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2164 ATGAATATTCATTTGAAACCTCAACTTGGAAACAACACTAGATCCCGTTTATGGATTCCTCAGCAAGAAGAATCTGTTGCTAAGAGAGCTCTCTTACAACAGATGAACGCAACGCTGCCTAAGGTTAACCGAAAAGGTCATCTTGCAGGTTCAGAACCTGAGGTGTTAAGTGATCCTGTTAATCCTCAAAGTCAAAATTGGAGTTCATCAGTGGTTGGTATTCCCCAATCTGATTCTGCCACTGTGAATGGCCTAATTCCTCTGCAAGATACAGATGAATGGATGGTGCATTCTTCTTGCCAACAAGGATTGCAAGAACATCGTATATTAAGATCTGAAGCAGTTTTGAGGAATCTCTCAGCTAAGAGCAGCAATCCTGGTGAAATTTGGGGTAACACCAGTGTTGATGTTAGCAGTGCAAGTGCCACCATGGTTGAGCCTTCGAATTCAAGTGCCATTTTGGATGAATTTTGCACACTTCAGGACAAGGATTTTCAGAAACTATCAGATTGCATCGTGAGCAACTTCAGTATGAGCCAGGATGTCCAGTCACAGATAACATCAGCAAGTCTAGCCGAGTCCCATGTGTTTTCTGTGCAAGACCTCGCCGTCGACGCAGGTGGTGCATCTTCAAGCCATGCTGATTTTAATGAATGCAGCTTTCTGCAAAATAATTCAAGGCCGCGAGTAGCTTCAAAAGCTCCACCCAGGCGTACCTATACTAAGGTACAAAGGGCTGGTTCTGTAGGAAGATCAATTGATGTCACTGCTTTCAAGAACTATGAGGAACTGATACATGCAATTGAATCCATGTTCGGACTCGAGGGTCTGCTTAATGACGACACCAGAGGCAGAGATTCAGAATGGAAGTTAGTATATGTTGATTACGAGAATGATGTTCTACTTGTTGGGGATGATCCTTGGGGATGCAATATTTCTAAAATATTTGAAAAAATGCTCACCGAATGCAAGTCTTAG 978 0.4284 MNIHLKPQLGNNTRSRLWIPQQEESVAKRALLQQMNATLPKVNRKGHLAGSEPEVLSDPVNPQSQNWSSSVVGIPQSDSATVNGLIPLQDTDEWMVHSSCQQGLQEHRILRSEAVLRNLSAKSSNPGEIWGNTSVDVSSASATMVEPSNSSAILDEFCTLQDKDFQKLSDCIVSNFSMSQDVQSQITSASLAESHVFSVQDLAVDAGGASSSHADFNECSFLQNNSRPRVASKAPPRRTYTKVQRAGSVGRSIDVTAFKNYEELIHAIESMFGLEGLLNDDTRGRDSEWKLVYVDYENDVLLVGDDPWGCNISKIFEKMLTECKS* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2164 325 Pfam AUX/IAA family 232 311 IPR033389 -
Amo17g2164 325 ProSiteProfiles PB1 domain profile. 238 325 IPR000270 GO:0005515
Amo17g2164 325 Gene3D - 235 323 - -
Amo17g2164 325 MobiDBLite consensus disorder prediction 57 71 - -
Amo17g2164 325 PANTHER AUXIN RESPONSE FACTOR 5 64 309 - -
Amo17g2164 325 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 64 309 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo17g2164 325 MobiDBLite consensus disorder prediction 43 71 - -
Amo17g2164 325 SUPERFAMILY CAD & PB1 domains 251 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2164 Amo-Chr17 111496100 111497926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2164 139 310 B3 DNA Binding Superfamily AT1G19850 57.143 5.64e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo17g2164 AUX_IAA 1.3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2164 K14486 - adu:107460158 587.415