Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2158 ATGAGATCATTCACATCACATGCTGTGCCTTCACGTACAGTAGTGAGAGACAGAGAAGAAGAACGGAGATGGCAGGGCACGAAGTTAGGTAGCCATGGATCACTTGCTGTGTTGTATATCTATAGAGAACTTGCATGCCGCAGGCACCACGTTCCCTTTGATTTTTCACAGTTCACAACAAACTTCACATCAATCCACAATGGCTATGAGAAAATCAATTTAGGAAGGAAACAACAGCAGCAAGGTGAAGACGTTCCAAAGGGTCACTTTGTTGTTTATGTTGGTGGAGTTGGAGAGAAGAGAAGCAGGTACATTCTTCCCATCTCCTTCCTCAGCACACCACAGTTTCAGATCCTCCTTCATCAGGCAGAAGAAGAGTTTGGATTTGATCATCAAATGGGTCTCACCATTCCTTGTCAACAACATGTTTTTGAGTCTCTTACTTCCATGCTCAGATGA 459 0.4379 MRSFTSHAVPSRTVVRDREEERRWQGTKLGSHGSLAVLYIYRELACRRHHVPFDFSQFTTNFTSIHNGYEKINLGRKQQQQGEDVPKGHFVVYVGGVGEKRSRYILPISFLSTPQFQILLHQAEEEFGFDHQMGLTIPCQQHVFESLTSMLR* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2158 152 Pfam Auxin responsive protein 72 151 IPR003676 GO:0009733
Amo17g2158 152 PANTHER SMALL AUXIN-UP RNA-RELATED 74 152 - -
Amo17g2158 152 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 74 152 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2158 Amo-Chr17 111123411 111126032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2158 12 147 Calmodulin-binding Proteins AT5G20810 33.088 6.88e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2158 K14488 - han:110918230 124.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2158 17 111123411 111126032 Amo17g2158 17 111123411 111126032 ECH
Amo13g1053 13 12694391 12694726 Amo17g2158 17 111123411 111126032 ECH
Amo08g0182 08 3130540 3132884 Amo17g2158 17 111123411 111126032 hybridization