Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2149 ATGGTTCAAAAACGAAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAGACTTCAAAGAATCATATACGGTGGAAGGGATGTAATGGACATGGACCCCAAGAACTGAATTATCAACTCAAAAGACTTAAGACTGAAGTTGAAAGTCTGTATGCTGAAGAATCTGCACTTGATGATTGTATAAGGCAAAAGCAAGAGCTAATAAAAAACTTGGAGGAAAATGAAAATTCTCAAAGGTACCTTTTCTTGACAAATGAAGATATTCTTAACCTTCCATGCTTCCAGAACCAAGAGCTTATTGCAATCAAGGCTCCGAAAGTTAGCGTTGTCGAGGTTCCCGATCCTGATCAGGAGTTAGGTTTCTGGCATTACAAAATGACTGTTAGAAGTGCAACTGGACCAATATATATATACCTATTGAGCAATAAAGGCCTTAAGTGTAAGGGTGATACTATCGAGCAGGTGAAGCTAATAGATCCATCATGGAATGGTAATCACTGCAAAATGAGGGACATGATATTATCAGAAAGCGAGGCTGATCTAAAAAATCCTTGTGAGGTTTTAACATCCCCAGGCTCAGAGGCATTTGGAATCCAAGAAATTACTCCTATGGAATTTAAAATGGATGATGACTATTGGTTTGAATCAGATGCTGGAGTGACCCTAACAGATTTGTGGGTTAACAATAACTTCTAA 711 0.3741 MVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCNGHGPQELNYQLKRLKTEVESLYAEESALDDCIRQKQELIKNLEENENSQRYLFLTNEDILNLPCFQNQELIAIKAPKVSVVEVPDPDQELGFWHYKMTVRSATGPIYIYLLSNKGLKCKGDTIEQVKLIDPSWNGNHCKMRDMILSESEADLKNPCEVLTSPGSEAFGIQEITPMEFKMDDDYWFESDAGVTLTDLWVNNNF* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2149 236 Gene3D - 39 148 - -
Amo17g2149 236 Pfam E2F/DP family winged-helix DNA-binding domain 2 32 IPR003316 GO:0005667|GO:0006355
Amo17g2149 236 PANTHER TRANSCRIPTION FACTOR E2FC 2 233 - -
Amo17g2149 236 SUPERFAMILY E2F-DP heterodimerization region 44 147 IPR037241 -
Amo17g2149 236 Coils Coil 62 82 - -
Amo17g2149 236 CDD E2F_DD 44 146 IPR032198 GO:0046983
Amo17g2149 236 SUPERFAMILY "Winged helix" DNA-binding domain 2 33 IPR036390 -
Amo17g2149 236 Gene3D - 1 34 IPR036388 -
Amo17g2149 236 SMART E2F_TDP_2 1 32 IPR003316 GO:0005667|GO:0006355
Amo17g2149 236 Pfam E2F transcription factor CC-MB domain 48 145 IPR032198 GO:0046983
Amo17g2149 236 PANTHER TRANSCRIPTION FACTOR E2F 2 233 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2149 Amo-Chr17 110938107 110941238 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2149 2 235 E2F-DP Transcription Factor Family AT1G47870 51.915 4.02e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Amo17g2149 E2F_CC-MB 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2149 K06620 - gmx:100797301 323.553