Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2144 ATGTCAACTTCAGGGGAGGATAAAAAATCCCAATTAAAGCATCGATTCCATCCACATTCTCATTCTCTTTCTCAATCCCTTGCCCATTCCATACTCCCTAACCCACCCCAGTTGACTCAAACATGTGCAATCAGTAGTTTCAACTTCAACAATCATAATCACAATCACACAAGTAATCATCGTCAACTACCTCCTACTTTCTACAATCAAACTCAGCCTCCCATTAGGGCAGAGAATCAAACCACCAGATATACAAAACATGCCACTCACAAACCTAATGCTACTGAAGCTCCTCATTTGGCTGCAGTTAACAACTGTCGTTATGACAGTTCCTTAGGGTTGTTAACCAAGAAATTTGTCTGCTTGATTGAAGCGGCTGACTATGGTACCTTGGATTTAAATAAAACTGCTGAGACCTTGGAGGTTCAAAAACGAAGAATTTATGATATTACAAATGTTCTCGAAGGAATAGGATTGATAGAGAAGACTTCAAAGAATCATATACGGTGGAAGGGATGTAATGGACATGGAGCCCAAGAACTGGATTATCAACTCAAAAGACTTAAGACTGAAGTTGAAAATCTGTACGCTGAAGAATCTGCACTCGACGATTGTATAAGGCAAAAGCAAGAGCTAATAAAAAACCTGGAGGAAAATGAAAACTCTCAAAGGTACCTTTTCTTGACAAATGAAGATATTCTTAACCTTCCATGCTTCCAGAACCAAGAGCTTATTGCAATCAAGGCTCCAAAATTTAGTGTTGTAGAGGTTCCCGATCCTGATCAGGAGTTAGGTTTCCGGCATTACAAAATGACTGTTAGAAGTGCAACTGGACCAATATATATATATCTATTGAGCAAGAAAGGTCTTAAGTGTAAGAGTGATACTATCGAGCAGGTTAAGCTAATAGATCCATCATGGAATGGTAATCACTGCAAAATGAGGGACATGATATTATCAGCAAGCGAGGCTGATCTAAAAAATCCTGAGGTTTTAACATCCCCGGGCTCAGAGGCATTTGGAATCCAAGAAATTACTCCTATGGAATTTAAAATGGATGATGACTATTGGTTTGAATCAGATGCTGGAGTGACCCTAACAGATTTGTGGGTTAACAATAACTTCTAA 1128 0.3901 MSTSGEDKKSQLKHRFHPHSHSLSQSLAHSILPNPPQLTQTCAISSFNFNNHNHNHTSNHRQLPPTFYNQTQPPIRAENQTTRYTKHATHKPNATEAPHLAAVNNCRYDSSLGLLTKKFVCLIEAADYGTLDLNKTAETLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCNGHGAQELDYQLKRLKTEVENLYAEESALDDCIRQKQELIKNLEENENSQRYLFLTNEDILNLPCFQNQELIAIKAPKFSVVEVPDPDQELGFRHYKMTVRSATGPIYIYLLSKKGLKCKSDTIEQVKLIDPSWNGNHCKMRDMILSASEADLKNPEVLTSPGSEAFGIQEITPMEFKMDDDYWFESDAGVTLTDLWVNNNF* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2144 375 PANTHER TRANSCRIPTION FACTOR E2FC 20 372 - -
Amo17g2144 375 Coils Coil 202 222 - -
Amo17g2144 375 Coils Coil 178 198 - -
Amo17g2144 375 SUPERFAMILY "Winged helix" DNA-binding domain 107 170 IPR036390 -
Amo17g2144 375 Pfam E2F transcription factor CC-MB domain 188 285 IPR032198 GO:0046983
Amo17g2144 375 CDD E2F_DD 184 287 IPR032198 GO:0046983
Amo17g2144 375 Gene3D - 178 288 - -
Amo17g2144 375 SMART E2F_TDP_2 107 172 IPR003316 GO:0005667|GO:0006355
Amo17g2144 375 MobiDBLite consensus disorder prediction 1 32 - -
Amo17g2144 375 Gene3D - 102 174 IPR036388 -
Amo17g2144 375 PANTHER TRANSCRIPTION FACTOR E2F 20 372 IPR015633 GO:0000978|GO:0006357
Amo17g2144 375 Pfam E2F/DP family winged-helix DNA-binding domain 109 172 IPR003316 GO:0005667|GO:0006355
Amo17g2144 375 SUPERFAMILY E2F-DP heterodimerization region 184 287 IPR037241 -
Amo17g2144 375 Coils Coil 375 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2144 Amo-Chr17 110894217 110897829 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2144 101 374 E2F-DP Transcription Factor Family AT1G47870 52.727 1.40e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Amo17g2144 E2F_CC-MB 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2144 K06620 - gmx:100797301 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2144 17 110894217 110897829 Amo17g2144 17 110894217 110897829 ECH