Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2105 ATGGTTACCAGCGCGGCTGATTCTTCCTCTAACCACCACTCTCCCATTGTTGCTGCCGCCACAACCACAAATGTTCCCACCAGTAACCTTAATTTCCCGCGAAAAAACCTGCCTTCTCCTTGGGCTCAAGTCGTTCGCGGCCCCGACGTTGAGCCACCCTCCGCCGCCGTCCACCAATTGCTGTCGCCATCGTCTTGCTCGTCCTCCTCTGCAACCGACCAACTGCTGCAATCCTCCGATCCCTCGCCGCTGGTTGAAAGTTCTAATTCCGATGGCGCCACCGCGGCTGCAGCAAGTGTAGATAGCTTGGATGCTGATAAGGCGGGCAATAATGCGGGTGGACCTAAGAAACCCGCGTGGAGGAGGCAATCCAACGGCGTAGAAGATGCTTGTGCTGTGAAGGTAATGGACGCTGTTTCTTGGCCCGCTTTGTCAGATTCCACCAAGCCTACCACTAAGTTGTCACCTGAGGCCTCATCTTCCAAGACTGCTTTTGATGGATCGCAACCTACTCCTCGGGGTCCGGTTGCTTTACACTCTCCTCGAAAGCAAGGAGTTGGCAATGCAAGACCTAATCCAGCATCAGTTTATGGTGGGGCTGGTAGACAAAGACTAATAAAGTGTGGAGGCGGCAATGTCAATGGCAATGGCAATGGTGCTGGCCCTGTTCAAGCAATGAGGAGCTTCTCTGCTCCTCCTCCTCCACCACCACCACCCCCTTTTCCTGTAATTCAGATGCCTCCAACTAGCTTTCCTAATGGGGTAGCAGGGGTGGCAGCCCTTGTTCCAAGAGATCCTTACAGGAATAGTAGCTGGGGTGCAAGGTCTTCGGTTGGGAGTTTCGTGCCACCAATGATTGAACATAGGAGTCCATCTCGCAGGGTAAATTTTGGGCATCATCCACGTACTGGTGGTTCTTTTCATAATTATGGCAGCCGGAGTGATCAGGATCGCCAAAATTATGCACATACCAGAGATCCTCAGTTACACCCGCCAAGGATGTTTCCAACACGAGCAATGAGCCCGCTTCCACCTAATACCCCTTCATTTGCAGGTCCTCAGCCTATACCACCGTTTGTAAACCATGCTGGTTTTCCTGAATATTGTTATTTTCCAACGTTACAATTTGAACCATTTGGGGGTATGCCATTCTTTACCCATGGACCTCCTGCTGCAATGTTCTATCCTGTTGCAGAAACTTCTCTTGTCAATGCAATAGTCAAGCAAATTGATTATTATTTTAGTGATACTAATTTAGTGAAAGATGAGTTTTTACGTTCTAACATGGATGATCAGGGCTTTGTTCCAATTAGATTGGTTGCAAGCTTTCGTCGTGTTAAAAGTTTGACAAGCAATGTTGAGTTGATTATAGATTCATTGAGAATATCTACTATTATAGAAGTGAAGGGTGATAAGTTGAGGAGGCGGAAGGATTGGATGAAGTGGCTGCCCTCTCCTTTGAATCGGGCAGATTTTGGTTCAACATCTATGGGTGGATCAAGTTATAATAACTCGGCAACTGATTTTGAAAATATCACTTTGGATAAGACCACTGTGGATAGACTTAATTCCAATTCTATCACAACCAGTGATGGCAATGTGAATGAAGAGTCCTCTAGTTCGTATCAATTCCATAATCATGATGCTATGCTTAGCAGCAATTAA 1665 0.4733 MVTSAADSSSNHHSPIVAAATTTNVPTSNLNFPRKNLPSPWAQVVRGPDVEPPSAAVHQLLSPSSCSSSSATDQLLQSSDPSPLVESSNSDGATAAAASVDSLDADKAGNNAGGPKKPAWRRQSNGVEDACAVKVMDAVSWPALSDSTKPTTKLSPEASSSKTAFDGSQPTPRGPVALHSPRKQGVGNARPNPASVYGGAGRQRLIKCGGGNVNGNGNGAGPVQAMRSFSAPPPPPPPPPFPVIQMPPTSFPNGVAGVAALVPRDPYRNSSWGARSSVGSFVPPMIEHRSPSRRVNFGHHPRTGGSFHNYGSRSDQDRQNYAHTRDPQLHPPRMFPTRAMSPLPPNTPSFAGPQPIPPFVNHAGFPEYCYFPTLQFEPFGGMPFFTHGPPAAMFYPVAETSLVNAIVKQIDYYFSDTNLVKDEFLRSNMDDQGFVPIRLVASFRRVKSLTSNVELIIDSLRISTIIEVKGDKLRRRKDWMKWLPSPLNRADFGSTSMGGSSYNNSATDFENITLDKTTVDRLNSNSITTSDGNVNEESSSSYQFHNHDAMLSSN* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2105 554 SUPERFAMILY "Winged helix" DNA-binding domain 393 484 IPR036390 -
Amo17g2105 554 PRINTS Lupus La protein signature 409 426 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Amo17g2105 554 PRINTS Lupus La protein signature 464 477 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Amo17g2105 554 MobiDBLite consensus disorder prediction 291 332 - -
Amo17g2105 554 MobiDBLite consensus disorder prediction 524 554 - -
Amo17g2105 554 CDD LAM 404 477 - -
Amo17g2105 554 MobiDBLite consensus disorder prediction 144 168 - -
Amo17g2105 554 Pfam La domain 406 461 IPR006630 -
Amo17g2105 554 MobiDBLite consensus disorder prediction 144 198 - -
Amo17g2105 554 MobiDBLite consensus disorder prediction 1 36 - -
Amo17g2105 554 ProSiteProfiles La-type HTH domain profile. 396 485 IPR006630 -
Amo17g2105 554 PANTHER LUPUS LA PROTEIN-RELATED 51 542 IPR045180 -
Amo17g2105 554 MobiDBLite consensus disorder prediction 58 96 - -
Amo17g2105 554 PANTHER LA-RELATED PROTEIN 1B 51 542 - -
Amo17g2105 554 SMART la 400 478 IPR006630 -
Amo17g2105 554 Gene3D - 395 484 IPR036388 -
Amo17g2105 554 MobiDBLite consensus disorder prediction 1 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2105 Amo-Chr17 108949516 108952097 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2105 K18757 - gmx:100775279 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2105 17 108949516 108952097 Amo17g2105 17 108949516 108952097 ECH
Amo08g0216 08 3598269 3600870 Amo17g2105 17 108949516 108952097 hybridization
Amo06g0921 06 12676775 12680277 Amo17g2105 17 108949516 108952097 PCT
Amo17g2105 17 108949516 108952097 Amo06g0921 06 12676775 12680277 PCT