Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2099 ATGCTCGATTCGGTTCTGTTGGCGCTCTTTCTGCCATGCCTTGGCATGAGCGCAATCTTTACAGTCTACATGTGCCTTCTCTGGTACGCCACCACCCGTCACTCGGCTGACAGGCTACCGGTTAAGCCAGTCTCTGAGAAGGGCCTCTCCTCCTCTGACTTGGAAAAGCTACCGAAAATACCCGGTAAGGAACTGGTCATGGGCTCCGAATGCGCCGTCTGCCTCGATGAGATCGAGAACGAGCAACCGGCTCGCCTGGTTCCTGGTTGCAACCACGGGTTCCATGTTGAATGCGCTGATACCTGGCTCTCCAAGAACCCGCTATGTCCGGTCTGTAGAGCCAAGCTTGACCCTCAGCTTTTCACTCCTCAAAGCCATTGCTGA 384 0.5521 MLDSVLLALFLPCLGMSAIFTVYMCLLWYATTRHSADRLPVKPVSEKGLSSSDLEKLPKIPGKELVMGSECAVCLDEIENEQPARLVPGCNHGFHVECADTWLSKNPLCPVCRAKLDPQLFTPQSHC* 128
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2099 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL23 1 125 - -
Amo17g2099 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 119 IPR013083 -
Amo17g2099 127 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 125 - -
Amo17g2099 127 SUPERFAMILY RING/U-box 70 120 - -
Amo17g2099 127 SMART ring_2 71 112 IPR001841 -
Amo17g2099 127 Pfam Ring finger domain 70 113 IPR001841 -
Amo17g2099 127 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo17g2099 Amo-Chr17 108725154 108726993 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2099 1 120 C3H Transcription Factor Family AT5G42200 55.906 5.60e-45 142
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2099 K19037 - gmx:100776003 222.631
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2099 17 108725154 108726993 Amo17g2099 17 108725154 108726993 ECH
Amo08g0224 08 3684634 3686807 Amo17g2099 17 108725154 108726993 hybridization
Amo06g0923 06 12753987 12755349 Amo17g2099 17 108725154 108726993 PCT
Amo17g2099 17 108725154 108726993 Amo06g0923 06 12753987 12755349 PCT