LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g2099	ATGCTCGATTCGGTTCTGTTGGCGCTCTTTCTGCCATGCCTTGGCATGAGCGCAATCTTTACAGTCTACATGTGCCTTCTCTGGTACGCCACCACCCGTCACTCGGCTGACAGGCTACCGGTTAAGCCAGTCTCTGAGAAGGGCCTCTCCTCCTCTGACTTGGAAAAGCTACCGAAAATACCCGGTAAGGAACTGGTCATGGGCTCCGAATGCGCCGTCTGCCTCGATGAGATCGAGAACGAGCAACCGGCTCGCCTGGTTCCTGGTTGCAACCACGGGTTCCATGTTGAATGCGCTGATACCTGGCTCTCCAAGAACCCGCTATGTCCGGTCTGTAGAGCCAAGCTTGACCCTCAGCTTTTCACTCCTCAAAGCCATTGCTGA	384	0.5521	MLDSVLLALFLPCLGMSAIFTVYMCLLWYATTRHSADRLPVKPVSEKGLSSSDLEKLPKIPGKELVMGSECAVCLDEIENEQPARLVPGCNHGFHVECADTWLSKNPLCPVCRAKLDPQLFTPQSHC*	128

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g2099	127	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE ATL23	1	125	-	-
	Amo17g2099	127	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	34	119	IPR013083	-
	Amo17g2099	127	PANTHER	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	1	125	-	-
	Amo17g2099	127	SUPERFAMILY	RING/U-box	70	120	-	-
	Amo17g2099	127	SMART	ring_2	71	112	IPR001841	-
	Amo17g2099	127	Pfam	Ring finger domain	70	113	IPR001841	-
	Amo17g2099	127	ProSiteProfiles	Zinc finger RING-type profile.	71	113	IPR001841	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g2099	Amo-Chr17	108725154	108726993	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo17g2099	1	120	C3H Transcription Factor Family	AT5G42200	55.906	5.60e-45	142

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g2099	K19037		-	gmx:100776003	222.631

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo17g2099	17	108725154	108726993	Amo17g2099	17	108725154	108726993	ECH
	Amo08g0224	08	3684634	3686807	Amo17g2099	17	108725154	108726993	hybridization
	Amo06g0923	06	12753987	12755349	Amo17g2099	17	108725154	108726993	PCT
	Amo17g2099	17	108725154	108726993	Amo06g0923	06	12753987	12755349	PCT