Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2080 ATGTCTGGTGGAAGTATGTATGACTTTCTTCATATAAAGAAGGCTGCGCTTTCTCTCCCATGGTTGCTTAAGGTTGCCATTGAGGTTTCAGAAGGAATGAAATATTTGCACCAGAATGATATCATACATCGAGACCTCAAAACAGCTAATCTCTTGATGGATAATAAAGGGGTAGTTAAGGTTGCTGATTTTGGGGTGGCTAGAGTGAACAATCAATCCGGGGTGATGACTGCAGAAACTGGAACTTATCGGTGGATGGCTCCGGAGGTGATTGAGCATAAACCATATGATCACAAAGCTGATGTTTATAGTTTCGGCATTGTCCTTTGGGAGCTTCTCACAGGAAAGCTTCCTTATGAGCATTTGTCCCCATTGCATGCGGCAGTTGGAGTGGCCCAAAAGGGTTTGAGGCCGGAAATTCCAAGGCACACGCATCCAATGTTGGTGGAATTAATTCACCGGTGCTGGCACCAAGATCCATCTTCAAGACCGAATTTCACAGAAATTCTGGAATTTCTGTTGCACATAACCATGAAGGTTGCTGGGAAAGGTGAGGTAAAGGGAATGTATGAAACGTTTTCAGGCTGA 588 0.4422 MSGGSMYDFLHIKKAALSLPWLLKVAIEVSEGMKYLHQNDIIHRDLKTANLLMDNKGVVKVADFGVARVNNQSGVMTAETGTYRWMAPEVIEHKPYDHKADVYSFGIVLWELLTGKLPYEHLSPLHAAVGVAQKGLRPEIPRHTHPMLVELIHRCWHQDPSSRPNFTEILEFLLHITMKVAGKGEVKGMYETFSG* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2080 195 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2080 195 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2080 195 ProSitePatterns Serine/Threonine protein kinases active-site signature. 41 53 IPR008271 GO:0004672|GO:0006468
Amo17g2080 195 PRINTS Tyrosine kinase catalytic domain signature 35 53 IPR001245 GO:0004672|GO:0006468
Amo17g2080 195 PRINTS Tyrosine kinase catalytic domain signature 144 166 IPR001245 GO:0004672|GO:0006468
Amo17g2080 195 PRINTS Tyrosine kinase catalytic domain signature 81 91 IPR001245 GO:0004672|GO:0006468
Amo17g2080 195 PRINTS Tyrosine kinase catalytic domain signature 100 122 IPR001245 GO:0004672|GO:0006468
Amo17g2080 195 SUPERFAMILY Protein kinase-like (PK-like) 1 173 IPR011009 -
Amo17g2080 195 Gene3D Transferase(Phosphotransferase) domain 1 2 189 - -
Amo17g2080 195 CDD STKc_MAP3K-like 1 173 - -
Amo17g2080 195 Pfam Protein tyrosine and serine/threonine kinase 1 173 IPR001245 GO:0004672|GO:0006468
Amo17g2080 195 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 177 - -
Amo17g2080 195 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 1 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2080 Amo-Chr17 106329477 106330693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2080 1 180 MAP Kinase Kinase Kinase AT4G35780 70.556 4.40e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Amo17g2080 PK_Tyr_Ser-Thr 1.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2080 - - aprc:113864606 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2080 17 106329477 106330693 Amo17g2080 17 106329477 106330693 ECH