Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2050 CACCCATTGACCCAGCCCCGTTGCCCGCAGCCCGCAACCAGCAGCCACGCCAACCACTGCAGCTACCTCAACCCCGCAACTCCGTCGCATGTACAGGCATCACGTGTGGAAGGTCAGCACCGTCGCAGGAGCTTGAAGTCATCTCCTCTATTCGAGAGTGCTCTCTCTTCTTATCATATATTACCTTTTATTATGTTTATAACACCTTTAAAACATGATTATTTTAAATTCAAAGGAAAGGATATAATCACGATCTCAACAAATACAGGACTTGAATTGGTAGTTTCAATGTCTTTAAGATACAAAAAAGCTAGTCAACCAAATGGGGGACATAAAAGTGTTGCTGTATTTTATGTGTATGTTGATTTTTGGGAGATGGAGCCATCGGATAGCAATTTTTTTGGAACAGACTCCGATGAGGAGTTTCCAAGAGGAGACGATCTAGATTTTTTAGACGACGATTCGGAGGCTGATGAAGATAGACCTCAAGATAAAAGAATATTTACAGATGAGGAAGCTGTTTATCGATTCTACAAGACTTATGTAATGATGCACGGTTTTACTGTGAGGTTGGTTGAACTCAGACGCGATAGCGATGGTTGCGTAATTATGCGCCAAATTGTTTGCAATCGGGCAGGCTCAAGAAAGGAAGAGGTGAGAATTCGTGCAAGACTAGATAGAAAAATTCATAAATGGAAGGTTGTTTCGTTCTACGAAGAGCACTCTCATGGATTAGTTGATCCACTCGACGTTAGCATGATGCCTAAGTATCGCACATTTAGTGTCTCGGATAAAAAAGATACCCTTCTTGAATTCATCAATAACATAGAGACCTTTGTTAGCCATTACAGGAACAATGAAAGAGTTGCAGAGTTCAATAGTAAATATACCGATCCAGTTCTTGTGACTTCTTCGCCGACACTTGAAGATTTTGCTGCAAAGACTTTCACTCATAACATGTTCCAGGAGGTCAGGAAGGAAATTGAGGGTGCTTGTGCTATGAATACAGAGTTGGTAATTCAGGATGGTGGAAAACTATACTTCAAGTGTAACAGTTTTGGAGTGCCAGAGATTGATCATGTGGTTGAGTTTGACAGAGTTGGGGGGATGCTTTGTGAGTGTCTGTGGTTCGAAAATAGAGGGATTCCATGCATGCACATATTTGCATGCCTAAAGCACCAACACGTTGAAGTTATTCCAGAATGCTTAGTGTGCAAGCGTTGGACGAAGAATGCCAAGAGCGATTTTATGAAGTCAAGCGTCGATGATCCAAGTGATTTTGATAAGGTACTAAAGTGTCGTTTGGGTGTGTTGGGTGCTGAGTGTTCTAGGTTGATGGATGTTTCATGTAAGAACTCAAGTGATTTTGTCAAAGCAATGAATGATGTTGTCAACACAATTACAAAACTCCAAAAGCGAGGTGAAAATCCACACAACGATAATTTAGACAATGACTACATTGTTGACCCATTGGTGGTGAAGAGTAAGGGAACTCCCAAGAAAAACTCAAAATTTAATCAACGTAGAAGGTGTTCAAACTGCGGTGTGATAGGGCACTACAACAAAAGTTGTCCTAATGTTCCTGGTAGAATCCCAAAGGAGCCGGTAGACGATGATACAGAAAAGAATATCAGCAGCCATCTTGACATCCTCACTAAGGTATCTCATACTATAACTATGTTTAGAATGTCGTTGTATGGTGATTCGGCATATTGTGTTTTGGATTTACAAACTATGTTATTTTTATGCTTTTGTAACGGAAGATGA 1767 0.4075 HPLTQPRCPQPATSSHANHCSYLNPATPSHVQASRVEGQHRRRSLKSSPLFESALSSYHILPFIMFITPLKHDYFKFKGKDIITISTNTGLELVVSMSLRYKKASQPNGGHKSVAVFYVYVDFWEMEPSDSNFFGTDSDEEFPRGDDLDFLDDDSEADEDRPQDKRIFTDEEAVYRFYKTYVMMHGFTVRLVELRRDSDGCVIMRQIVCNRAGSRKEEVRIRARLDRKIHKWKVVSFYEEHSHGLVDPLDVSMMPKYRTFSVSDKKDTLLEFINNIETFVSHYRNNERVAEFNSKYTDPVLVTSSPTLEDFAAKTFTHNMFQEVRKEIEGACAMNTELVIQDGGKLYFKCNSFGVPEIDHVVEFDRVGGMLCECLWFENRGIPCMHIFACLKHQHVEVIPECLVCKRWTKNAKSDFMKSSVDDPSDFDKVLKCRLGVLGAECSRLMDVSCKNSSDFVKAMNDVVNTITKLQKRGENPHNDNLDNDYIVDPLVVKSKGTPKKNSKFNQRRRCSNCGVIGHYNKSCPNVPGRIPKEPVDDDTEKNISSHLDILTKVSHTITMFRMSLYGDSAYCVLDLQTMLFLCFCNGR* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2050 588 ProSiteProfiles Zinc finger CCHC-type profile. 509 526 IPR001878 GO:0003676|GO:0008270
Amo17g2050 588 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 268 463 - -
Amo17g2050 588 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 268 463 IPR031052 GO:0006355
Amo17g2050 588 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 167 247 - -
Amo17g2050 588 ProSiteProfiles Zinc finger SWIM-type profile. 360 395 IPR007527 GO:0008270
Amo17g2050 588 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 167 247 IPR031052 GO:0006355
Amo17g2050 588 SUPERFAMILY Retrovirus zinc finger-like domains 497 532 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2050 Amo-Chr17 104365428 104372963 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo17g2050 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2050 - - aip:107607487 606.675