Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2044 ATGAGCTCCTTCCGTGCCGCTCTCGTCGCTGCTTCTTCTCTCCTCGCTGGAGGTTTGCCATCATCTCTTCTCGTCGCTGTTAGTTCAGGAGAAGGTTACGAACCCGTACTAATCCAGAGGAAGAAGAGGATCCTGAAGCAGAGGTTGAAGGTTCCACCAGCTTTGAACCAGTTCACCAAGACCCTTGACAAGAACATAGGTGCGCAGGAGGTCTTGTTTTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAAGAAAGAGAGCAAGGCATTCAAGAAATTCAGCAGCAAATTGGTGAAGTAAATGAAATTTTTAAAGATCTTGCTGTGTTTGTGCATGAACAGGAAGCTATGATTGATGATATTGGGTCCAACATTGAGCAGTCTCATGCAGCAATTGCACAAGCAAGATCGCAACTTGCTAAAGCTTCAAAGACTCAAAGATCAAATTCTTCTTTGACTTGTTGGGCCTTTCTTAAACATAGGTCAGAGGTTTCATTTTCTGTTGGGTCTTGCCTCCTTCCTCATCCAGACAAGCTTATTCTTCAATGGTTGACTGGGATATTTGTGCTTATCTATGGTTTTGTTGAGAGAAAGCAGTTTTCTACTGACATCTCCTCCAAGTTGGGAAGTAGTTTCTCTATTGTTCTCTTTGTCATTGTGGTGGTAAGCATTATGCCTTGTCTTTCTCTTATCTTAGTACATGGCTACTATACTGCTATAACATATTACTTTATTACGTGTTTGGAAATCGGAATATATTTCATTTCTTTTCTTTTCTTCTTTCACATCCTCRTTGTTGAAAAGGMAACTTGGCAGTTGCTTGCTACATCATTAATRTGGCAAAAAGAAAATGATGGAAGCCAATTGAAAAATATTCTGATATTTGTGTACCCTTTTTTGAATCCTCTACAAGGAATCAATACTTATGATTACATCATAGCTCTGACGGAGCAAGAGCAGGAGCAGCAAGGAGTTGGTGGTCAACAAAGTCCTCAAATGTCAACTGTTAGCTCACTTACTGGATTTAGCAGTGCGAGCTCCTTCACTACGTTCCAGCGTGGTTCGTGGTGCACACCACCACACCTGTTCGATGAAGATCAGTTTGATGTAATCCCACCAAAAACCGGTTCCGTAAGCTCACTTGGAAAGAAGACAGTCAAAATTAGTCCTTGGACATTAGTGCAATTAAATGCAAAAGAGGTTTCCAAGGCTGCTACTGAAGCAAGAAAAAGGTCCGAAATTCTTTTTGGTAGCCGGGGTCGACAAGTCCCCAGAATCGACAACAAACGGCGTACTGCCAGCAAGCAGGGTTTCCTTCCTGCTGACATAGCTATGGCTTCCATGACAAAAGGTCCTGATGTCCATTCTTCTTTTATAAAATTTGAAAAACCCATTATCCCTCATCCACTCTTTGTGGAGTGGGATTTGAATATACTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGAGGAGCATCGTGTTGTTCCTCAGGATGTCCCATCTTGTATAGTTTATGATGAGGGTAATGATGAAAGAGACCTTCAGCTCCCTCTTTGTAAACAAAAAGCAGCACTACCAAACACCCGTGGTTCCACCAATGACAAGGCGTTGATCTTGGAACCTGCAATTCGGAAAGTGGTCCAGCTGTGTGTCCTGAAGGGTGATTTTGAAAGTGAGGATTGGACTGTTGAGGAATTCAATAGCAACATAGAAAGTCCAAGAGAAAGAAAAGGATCATTACTCAAGGGAGACACGGCTATTATTTTCAAGAATGTTAGCTGCTGCAAAGGCAGCTCAGGAGTCGATTCACAATGGCGCTCTTCTATCAGAAGAATACATTAA 1860 0.4172 MSSFRAALVAASSLLAGGLPSSLLVAVSSGEGYEPVLIQRKKRILKQRLKVPPALNQFTKTLDKNIGAQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVFVHEQEAMIDDIGSNIEQSHAAIAQARSQLAKASKTQRSNSSLTCWAFLKHRSEVSFSVGSCLLPHPDKLILQWLTGIFVLIYGFVERKQFSTDISSKLGSSFSIVLFVIVVVSIMPCLSLILVHGYYTAITYYFITCLEIGIYFISFLFFFHILXVEKXTWQLLATSLXWQKENDGSQLKNILIFVYPFLNPLQGINTYDYIIALTEQEQEQQGVGGQQSPQMSTVSSLTGFSSASSFTTFQRGSWCTPPHLFDEDQFDVIPPKTGSVSSLGKKTVKISPWTLVQLNAKEVSKAATEARKRSEILFGSRGRQVPRIDNKRRTASKQGFLPADIAMASMTKGPDVHSSFIKFEKPIIPHPLFVEWDLNILKKPIVTYEWLKQCSEEHRVVPQDVPSCIVYDEGNDERDLQLPLCKQKAALPNTRGSTNDKALILEPAIRKVVQLCVLKGDFESEDWTVEEFNSNIESPRERKGSLLKGDTAIIFKNVSCCKGSSGVDSQWRSSIRRIH* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2044 619 Gene3D - 34 90 IPR029064 -
Amo17g2044 619 Gene3D - 91 153 - -
Amo17g2044 619 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 82 144 IPR000727 -
Amo17g2044 619 Pfam Calmodulin binding protein-like N-terminal domain 551 597 IPR046831 -
Amo17g2044 619 PANTHER SYNTAXIN OF PLANTS PROTEIN 69 159 - -
Amo17g2044 619 Pfam SNARE domain 119 160 IPR000727 -
Amo17g2044 619 PANTHER SYNTAXIN 69 159 IPR045242 -
Amo17g2044 619 SUPERFAMILY t-snare proteins 64 137 IPR010989 GO:0016020|GO:0016192
Amo17g2044 619 SMART tSNARE_6 77 144 IPR000727 -
Amo17g2044 619 ProSitePatterns Syntaxin / epimorphin family signature. 88 127 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2044 Amo-Chr17 104255125 104259456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2044 69 157 SNARE and Associated Proteins AT5G46860 73.034 2.69e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2044 K20027 - rcu:8281862 222.246