Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2042 ATGCCTCCACCATTTGATATGATTTRTAAGATGCATCCTCCTAGAGAGGCTTGGAYGCTGAAAGTTAGGGTTRTAAGGCTTTGGGTTGTACRCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGYAAAAATTCAAGCTACAGTCAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGACAAGTTTATAGAATGYCATATTTTGCTYTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGARTTTTTAGTTGATGTCATTGGACTTTTAACTTCAGTTGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGCATTGGAATTAACTTCAAAAGATCTTACAGTGCGATGCGCATTGTTTGGGGATTATGTTAATCAAGTAAATCATTTCCTTGCCTCTGGGTATGGGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGACATTCCTGAAGTTGTTGAATTCAGGCAAAGTATGATTGAGCAAGGTGTCAGTGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTCTCTCCTTGGAAGATGATTTCATGCGTTTAATTAGAAAATGCACTATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATTTTTGGAGCAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCRATCCTCAAAATGGTGCCTATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTCACTCCAAGATTTAAAATTAAAGTGACAGTTGAAGATCATACTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCTTCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTACTGAGGTTCAAAGAGATGCAAGTGTATGGCTCATTGGAAAGAAGTTGCTGCTCAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATGGGACTTTCCGAGTTAGGAGAATTTGTGATGATTCTACCATTATTGCGATGTTTGAACTTCCCAATTATGATGCTGATGATGAGTCTACTCCAAAAAAGGAGCATGATTTACACAAATCTGTTCCTCGTGGAAAAGCGGATGTTGGTATTAAGAAGGAGTCTTCTAATAGTTTTATCAAAAGTGAGAAAGATGCTMGTGAGTGTTCTGGGATTTTGTGTAAATCRCCCGTTCTTATAGATTTTTTGGCTGAAAAARAGCCTGTTGTTTCCGGYGGGACTGAGTTTGTTGGCTTAATTGATGGTGAGCATGGAAAAGAAGARAAAACTCCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAARTYGATATATTGCTTAGCTCAGCAGAAAAAGAAACTCAGGGTGACAGAGCTCTTCCCCCAAATTTTGTTTCAACTCATGGGGAACAATTGGGGCCAATGTTCTATGTCATTGACGAGTTAGATAATTGTTTAGTGCTGGAGGTGATAAGAAAGAATTATCAGTTGCTCATAACTGACTCCTCATTTGAACATATTAGAACTTTCTATTTTATTGGTAGAGGGGCATCTGATAACCAACCCATCCGAGTTCACCTTGATCCTGACTTCTATGTTCCTGAGCTAATGGACCCAGAGACACTTGATAATGTATCAAGAGTGTTCTACATAAAGTACACCAGGATGGATGAGGACTCATCAGCTGATGTGATTGTTCTCTCCGGGTCTGAACCATCGGATGATCAGTTTTCATCAGATGCTGATGAAAACAATGATCAAAGTGGGGCACTGCTAGGGGATAATCCCAATGATCCGATAGATTTGTCTAGTGGAAGTAGTTTATCATTGGAGGTTAATGAACAAAGTCACGCGGCAAACGAGTTGGTTTCTTATGAAAAGAAAATCACAGCTTCGGATGTTGCACAACCTAGATTATATTTGGCTTCAAAATTCGCTGCGTATCTTAAACTGTGTGGAGATGGCTCAATTTGGACAATCACTGGTCCAGATTCCAATGTAGAGAAGAATGTCTTCTTCTTCCACTTATTGAAAAGTGGAGGAAGAGGTGGAGAATGGAAATTTGGAGTTGGGTGGAGGGAATGTTGTAGAATATACAACTTAAAGGAGGGTGATATCATTACTTTGAAACTCGGCTCGATAGCTAGACGGCAGATAGAGTTATCGATCCAGCGACATTAG 2430 0.3893 MPPPFDMIXKMHPPREAWXLKVRVXRLWVVXSFGNHEVPNSMEMILLDEHCXKIQATVKKPLLNRFRDHIVEGQVYRMXYFAXVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSELLNMTQDYEFLVDVIGLLTSVGEEKEYAKEGKIVKMIALELTSKDLTVRCALFGDYVNQVNHFLASGYGEQPVVVIQLAKVKFFRGQVGLQNVMYATQMLFNPDIPEVVEFRQSMIEQGVSGTQPLFIANEGKVLSLEDDFMRLIRKCTIEELQDNNQEGSFIIFGAIQGIVEDGGWWYSACVCGKGIXPQNGAYYCDFCLKHITNVTPRFKIKVTVEDHTGEGIFLLFDREASYLLKKSCADLFTEVQRDASVWLIGKKLLLKVDTKGVPHDTFYGTFRVRRICDDSTIIAMFELPNYDADDESTPKKEHDLHKSVPRGKADVGIKKESSNSFIKSEKDAXECSGILCKSPVLIDFLAEKXPVVSGGTEFVGLIDGEHGKEEKTPSNDTVSDDLSAEXDILLSSAEKETQGDRALPPNFVSTHGEQLGPMFYVIDELDNCLVLEVIRKNYQLLITDSSFEHIRTFYFIGRGASDNQPIRVHLDPDFYVPELMDPETLDNVSRVFYIKYTRMDEDSSADVIVLSGSEPSDDQFSSDADENNDQSGALLGDNPNDPIDLSSGSSLSLEVNEQSHAANELVSYEKKITASDVAQPRLYLASKFAAYLKLCGDGSIWTITGPDSNVEKNVFFFHLLKSGGRGGEWKFGVGWRECCRIYNLKEGDIITLKLGSIARRQIELSIQRH* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2042 809 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 372 - -
Amo17g2042 809 CDD RPA1_DBD_C 277 409 IPR013955 -
Amo17g2042 809 Pfam Replication factor-A C terminal domain 293 375 IPR013955 -
Amo17g2042 809 Gene3D - 263 419 IPR012340 -
Amo17g2042 809 PANTHER REPLICATION FACTOR A 1, RFA1 22 372 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo17g2042 809 SUPERFAMILY DNA-binding pseudobarrel domain 705 795 IPR015300 -
Amo17g2042 809 SUPERFAMILY Nucleic acid-binding proteins 275 394 IPR012340 -
Amo17g2042 809 Pfam Domain of unknown function DUF223 43 136 IPR003871 -
Amo17g2042 809 Gene3D - 5 112 IPR012340 -
Amo17g2042 809 SUPERFAMILY Nucleic acid-binding proteins 3 112 IPR012340 -
Amo17g2042 809 CDD B3_DNA 707 794 IPR003340 GO:0003677
Amo17g2042 809 Gene3D - 114 250 IPR012340 -
Amo17g2042 809 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Amo17g2042 809 MobiDBLite consensus disorder prediction 650 689 - -
Amo17g2042 809 CDD RPA1_DBD_B_like 140 243 - -
Amo17g2042 809 Gene3D - 692 809 IPR015300 -
Amo17g2042 809 CDD RPA1_DBD_A_like 41 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2042 Amo-Chr17 104211919 104244696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2042 8 371 Core DNA Replication Machinery Family AT5G08020 23.711 1.33e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2042 - - adu:107471135 918.302