Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2020 ATGAGAGATGGTGGAGTGTTATCATCAGGTACCATGCTGGAACCTACTCCTCCTCCTCCTCCTCCTTCACCACTACCACCACCGCCACCACCTCCTTCAGAGGTAGCAACAACAACAACAACATCAATATTAATGGACTTTGATTACATCAATGAACTCTTTGTAGATGGTTGCTGGTTAGCAGCTTCTTCTTCTTCTGCTGCTGCTGCTGCCGATGGATCTGCTGATTTCTATGTGTCAAGTCCTTCTTTTTCAAACCCCATATTTGATCCTTTCTCTTGGCCTTCCTTGGATACTGAACAAATTGAATCCCAAGAACGAGAACAGGAACATGAACAACAACAAGAACAACCACCTTTTAGCCATGACTTAGTTGTTGCTGCTAATAATTGTAGCCAGAATCAGCAACAACAGTATCATCACTATGAGAATCAGTCAGTGGAAAACAATAATCCAAATCCTAATAATCCTTCTGAGTTTTTCAGAAGGTGGTGGATTGCACCAAGTTCTAATCCGGGACCTGGATCTTATGTAGTTGAGAAGCTATTGAAGGCACTCATGTGTATCAAAGATGTGAACAGAAACAAAGACATGCTTATACAAATATGGATTCCAGTTATAAACAGAGGAGGCACTCAGATTCTCAGAACCAATGGGCTTCCATTCTCACTTGAATCAAGCTCTGTGAACCTTGCAAAGTACAGGGAAATTTCGGAGGTGTACCAGTTCTCCGCCGAGGAGGATTCGAAGGAGTTGGTGCCCGGATTGCCAGGGAGAGTTTACAAGGAGAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTCAGGAGCTATGAATATCCAAGAGTTGACCATGCTCAAGTCTATGATGTGAGAGGATCATTGGCACTTCCAATCTTTGAGCAAGGTAGCAAGAATTGCTTAGGTGTTGTTGAAGTTGTCATGACTCAACAGAAAATCAACTATCGCCCTGAACTTGAAAGTGTTTGCCAAGCACTTGAGGCTGTTAATCTTACAAGCTCAAAACTTCCAACTATTCAGAATGTGAAGGTAAAAATGAAAAAAAAAAAAAAGAAAAATCATCTGAGACATACATCATGTGAAAAGTCCTATGAAACTGCATTGCCTGAGATTCAAGAAGTATTAAGATCTGCATGTGAAATTCACAAATTGCCATTGGCACAGACATGGATTCCATGCATCAAACAAGGCAAAGAAGGATGCCGGCACTCAGAAGACAACTATCCACACTGCATATCTCCAGTGGAGCATGCTTGCTATGTTGGTGACCCTTCAATCCAGGTCTTTCATGAGGCATGCTCTGAGCATCACTTGTTAAAAGGCCAAGGTGTTGCCGGCGGAGCATTCATGACGAATCAGCCTTGCTTCGCACCCGACATAACTTTGTTAAGCAAGACAGACTATCCACTTTCTCATCATGCAAGGATGTTTGGATTGCGCGCTGCAGTCGCCATACGCTTGCGAAGCATCTATAATAGTTCAGATGACTTTGTTCTTGAGTTCTTCTTGCCTTTGGAATGCATTGACAATGATGAACAGAAGAAGATGCTCACTTCATTGTCATTGATCATACAAAGGGTTTGCCATAGCTTGAGGGTTATATCAGATAAGGAATTGGAGGAGGAAACTGATTTTTCAGTTGAAGAAGTGATAGCTCATGAAGATAGTGGCACTTTTGCTAGTGCTGCAGCGTGGCCAGAACCACTGCAGAGTCAAATTGTTGCTTCATTGGGTGCTCAAGAAAAATCAAGTGAAACTATGGGGACGAGTTTCTCCGACCAAAGGCAACAACAGCAAGAGAGTTCTGTTTTGAAAGGGAACCTTGACTCTAATGGGGAGTGTTCTACTTATAATGTCGGGAACTTGTCAAGTAAAACCGGAGACAAGAAGAAGAGCAAAGTAGATAAGACTATCACTCTGCAAGTTCTTCGCCAACACTTCGCCGGAAGCCTAAAAGATGCAGCAAAGAACATTGGTGTTAATACAAATCTTATGGTACTTTGTCCTTATGGAATCATTACTTTGCAGTTTGTACTACAACCCTTAAAAAGGATCTGCCGGCAACATGGGATAAAACGTTGGCCTTCAAGGAAGATCAAGAAGGTTGGTCATTCCTTGCAGAAGCTTCAACTTGTGATCGACTCAGTCCAAGGTGCTTCTGGTGCATTCCAAATAGATTCCTTCTATTCAAAATTCCCAGACTTAGCTGCTTCTCCAAATCTATCAGGAACAAGCCTGTTCTCAAATCTCAAGCAATGTGATAATAATCCAAACTCACTAAGCATACAGCCGGATCCTGGTTCGCTGAGTCCGGAAGGCGCATCAAAATCGCCGTCCTCTTCTTGCAGCCAGAGCTCGATTTCTAGCCATCCATGTTCCAGCATGGCTGAGCAACAGAATCATCATCACACAAATAATAATTTTGATAGTAGCAAAGATCAAATGGTGTTATTGGTTGGAGAGAATTCTAGCGGCGATGGCTTGTTGAAGAGGATAAGAAGTGAAGCAGAATTGAAAAGCTTGAATGAAGATAGAGCAAAAGTAGTCATGCCAAGATCGCAAAGTCAAGAAACACTTGGTCAACATAACCTTAAAAATGGGCACCATGGATCATTGTCAAGAACCAAAAGCAAAGGGACTCAAAAGGAGGATGCACCTTATAGAGTGAAAGTAACATATGGGGATGAGAAAGCAAGGTTCAAGATGCCAAAGAATTGGGGATATGAAGATCTTGTGCAAGAAGTTGGTAGGAGATTCTGCATAAGTGACATGAACAAATTTGATCTCAAATATTTGGATGATGATTATGAATGGGTGCTACTAACCTGTGATGATGATTTAGAAGAATGCATTGAAGTTTGTCAATCATCTGAGAGCACCACCATCAAGCTTTGTCTTCAATTCTCTAATACTAATCATAGTATGCGAAACCCTTTAGAATTTAGATAG 2970 0.4182 MRDGGVLSSGTMLEPTPPPPPPSPLPPPPPPPSEVATTTTTSILMDFDYINELFVDGCWLAASSSSAAAAADGSADFYVSSPSFSNPIFDPFSWPSLDTEQIESQEREQEHEQQQEQPPFSHDLVVAANNCSQNQQQQYHHYENQSVENNNPNPNNPSEFFRRWWIAPSSNPGPGSYVVEKLLKALMCIKDVNRNKDMLIQIWIPVINRGGTQILRTNGLPFSLESSSVNLAKYREISEVYQFSAEEDSKELVPGLPGRVYKEKVPEWTPDVRFFRSYEYPRVDHAQVYDVRGSLALPIFEQGSKNCLGVVEVVMTQQKINYRPELESVCQALEAVNLTSSKLPTIQNVKVKMKKKKKKNHLRHTSCEKSYETALPEIQEVLRSACEIHKLPLAQTWIPCIKQGKEGCRHSEDNYPHCISPVEHACYVGDPSIQVFHEACSEHHLLKGQGVAGGAFMTNQPCFAPDITLLSKTDYPLSHHARMFGLRAAVAIRLRSIYNSSDDFVLEFFLPLECIDNDEQKKMLTSLSLIIQRVCHSLRVISDKELEEETDFSVEEVIAHEDSGTFASAAAWPEPLQSQIVASLGAQEKSSETMGTSFSDQRQQQQESSVLKGNLDSNGECSTYNVGNLSSKTGDKKKSKVDKTITLQVLRQHFAGSLKDAAKNIGVNTNLMVLCPYGIITLQFVLQPLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGAFQIDSFYSKFPDLAASPNLSGTSLFSNLKQCDNNPNSLSIQPDPGSLSPEGASKSPSSSCSQSSISSHPCSSMAEQQNHHHTNNNFDSSKDQMVLLVGENSSGDGLLKRIRSEAELKSLNEDRAKVVMPRSQSQETLGQHNLKNGHHGSLSRTKSKGTQKEDAPYRVKVTYGDEKARFKMPKNWGYEDLVQEVGRRFCISDMNKFDLKYLDDDYEWVLLTCDDDLEECIEVCQSSESTTIKLCLQFSNTNHSMRNPLEFR* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2020 989 MobiDBLite consensus disorder prediction 592 616 - -
Amo17g2020 989 PANTHER PROTEIN NLP4 42 979 - -
Amo17g2020 989 MobiDBLite consensus disorder prediction 1 37 - -
Amo17g2020 989 SUPERFAMILY CAD & PB1 domains 887 976 - -
Amo17g2020 989 MobiDBLite consensus disorder prediction 13 35 - -
Amo17g2020 989 Pfam PB1 domain 894 974 IPR000270 GO:0005515
Amo17g2020 989 CDD PB1_NLP 895 974 IPR034891 -
Amo17g2020 989 Pfam RWP-RK domain 644 709 IPR003035 -
Amo17g2020 989 ProSiteProfiles RWP-RK domain profile. 631 729 IPR003035 -
Amo17g2020 989 MobiDBLite consensus disorder prediction 99 118 - -
Amo17g2020 989 Gene3D - 894 975 - -
Amo17g2020 989 PANTHER PROTEIN NLP8 42 979 IPR045012 GO:0003700
Amo17g2020 989 ProSiteProfiles PB1 domain profile. 893 976 IPR000270 GO:0005515
Amo17g2020 989 SMART PB1_new 893 976 IPR000270 GO:0005515
Amo17g2020 989 MobiDBLite consensus disorder prediction 856 881 - -
Amo17g2020 989 MobiDBLite consensus disorder prediction 850 891 - -
Amo17g2020 989 Coils Coil 97 117 - -
Amo17g2020 989 MobiDBLite consensus disorder prediction 764 816 - -
Amo17g2020 989 MobiDBLite consensus disorder prediction 101 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2020 Amo-Chr17 103303247 103307262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2020 45 974 NLP Transcription Factor Family AT4G35270 40.785 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo17g2020 PB1 1.2e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2020 - - ahf:112705709 1695.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2020 17 103303247 103307262 Amo17g2020 17 103303247 103307262 ECH
Amo08g0264 08 4736531 4739979 Amo17g2020 17 103303247 103307262 hybridization