Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2006 ATGAGCTGCTTCTCGTGCTTTGTTTCTCGCGCCAAAGATGCCAGCAGAGTCGAAATTGACACTGGTTCTCGATCTGCTTCCTCAGGCTCTGGTGGAGGGAAATACACTGCTGCTACTGAGAGTGAAAGGAGGAAGAAGGAATCGTATTCGGAGGGGAAGGGGAAGAGTACGAGTAATGGGAAAAGCAGCACGGCGGCGGCGAGCTTTGGATTCCGAGAGCTGGCGGCGGCAACACGGGGTTTCAACCAAGTCAATTTGATCGGTGAGGGCGGTTTCGGACGCGTTTACAAGGGTCGCCTCTCTACTGGCCAGGTTGTTGCCATAAAGCAGTTAAGTCATGATGGTCATCAGGGCTTTCAGGAATTTGTGATGGAGGTTCTTATGTTAAGCCTTCTTCACCATTCTAACCTTGTCAGGCTCATAGGTTATTGCACCGATGGAGATCAAAGGCTTTTAGTTTATGAGTATATGCCTATGGGTTGCCTTGAAGATCATCTCTTTGATCCTCCCCAAGACAAAGAACCACTAAGTTGGAGTACGCGGATGAAGATTGCTGTTGGGGCTGCCCGAGGTCTTGAGTATCTTCATTGTAGAGCTGATCCGCCAGTTATTTATCAAGACTTGAAGTCTGCAAATATCTTATTAGACAATGAATTCAATCCCAAACTGTCAGATTTTGGGCTTGCAAAACTTGGACCTGTTGGAGACAATACCCATGTTTCAACAAGGGTGATGGGAACATATGGCTACTGTGCACCAGAATATGCCATGAGTGGCAAATTAACACTTAAATCTGATATATACAGCTTTGTCGTGGTTTTGTTGGAGTTGATCACTGGGCGTAGGGCAATAGATAGTAGCAGAAGACCAGCGGAGCAAAACTTAATTTCATGGGTGAATGTTTAG 906 0.4647 MSCFSCFVSRAKDASRVEIDTGSRSASSGSGGGKYTAATESERRKKESYSEGKGKSTSNGKSSTAAASFGFRELAAATRGFNQVNLIGEGGFGRVYKGRLSTGQVVAIKQLSHDGHQGFQEFVMEVLMLSLLHHSNLVRLIGYCTDGDQRLLVYEYMPMGCLEDHLFDPPQDKEPLSWSTRMKIAVGAARGLEYLHCRADPPVIYQDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFVVVLLELITGRRAIDSSRRPAEQNLISWVNV* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2006 301 SUPERFAMILY Protein kinase-like (PK-like) 69 294 IPR011009 -
Amo17g2006 301 Gene3D Transferase(Phosphotransferase) domain 1 157 301 - -
Amo17g2006 301 SMART serkin_6 81 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2006 301 ProSiteProfiles Protein kinase domain profile. 81 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2006 301 MobiDBLite consensus disorder prediction 13 63 - -
Amo17g2006 301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Amo17g2006 301 PANTHER OS07G0668900 PROTEIN 1 299 - -
Amo17g2006 301 Pfam Protein kinase domain 82 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo17g2006 301 MobiDBLite consensus disorder prediction 20 35 - -
Amo17g2006 301 ProSitePatterns Protein kinases ATP-binding region signature. 87 109 IPR017441 GO:0005524
Amo17g2006 301 Gene3D Phosphorylase Kinase; domain 1 38 156 - -
Amo17g2006 301 CDD STKc_IRAK 87 299 - -
Amo17g2006 301 PANTHER OS07G0668900 PROTEIN 1 299 - -
Amo17g2006 301 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2006 Amo-Chr17 102669040 102671913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2006 1 298 Glycoside Hydrolase AT3G07070 60.870 6.33e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Amo17g2006 Pkinase 3.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2006 - - ahf:112766341 574.318