Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2003 ATGTTGATGTCTGGCCCGTTTTTAACAGGATATACTCAGACTATAAATGATTGGTATGACCGAGAAATCCGAATTCCTTCTGGGGTTATATCTGAGAACGAGGTTATCACTCAAACATGGGTGCTGCTACTAGGAGGTCTTGGCTTGGCAGGTCTATTAGACGTATGGGTTGTAAAGTGGCGATGTCCAAAGCAAAGCCTATCTCCCAACCCCGATCCCGGATTTGGTTGTCCAAAGAAAAGCCTAGCTCCCAATGCTGATGCCGGTTTTGGATTTCCAAAGAAAACCATACCTCCCAAGAAAAGCCTTCCTCCTAACCCTGATACTAGTTTCCAGAAAATGGTCCTTTATTTAGAGTCTATAGGTCTAGACTCTTTCTCAGTTATCGAAAATCATCCGAAGTTGATCACTGCCTCCCTCGATGACATTAAATCTACAGTGGAATACATTATGTCCATGGACTTCACCACGACCGAGTTTCGACGCATAGTTGGCATGTGCCCGGATGTTTTGACCACCCACGTCTCGGACATCATACCCGTCTTTACCTTCCTTCTCCGCGAGGCTCATGTAAAAGGCTCGGATATTAAAAGGGTCATACATCGCCGCCCGAGGTTGCTCGTTTGCAGTGTCAATAACCAACTCCGTCCTACACTTTACTACCTCCAAAGTATTGGCATAGAAGAGGTAAGTAGGCACACTGATTTGCTATCATGTAGTGTCCAAGAAAAGCTTATACCCCGAATAGATTACTTCGAGAATATCGGGTTTTCTCGACGCGATGCAACTACCATGTTTCGAAGATTTCCTCCACTGTTTTGCTACAGTATTAAGAATAATCTGGAGCCGAAATACAATTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGCTGAAGGAGTTTCCACAGTATTTCTCATTTAGCTTAGAGAATAGAATTAAGCCGAGGCATAAACGCTGCATAGAAATGGGGGTGTGTTTCCCTCTCCCTGTGTTGTTAAAGATGACCGAAATGAGCTTTCAAAATAGGTTAGATCTATGTGTAAATTCCTCAACACCCTTGAAAAAATCTCCTCTCTGGTGTAATGCTTGTGATATTCAAGTATAG 1110 0.4351 MLMSGPFLTGYTQTINDWYDREIRIPSGVISENEVITQTWVLLLGGLGLAGLLDVWVVKWRCPKQSLSPNPDPGFGCPKKSLAPNADAGFGFPKKTIPPKKSLPPNPDTSFQKMVLYLESIGLDSFSVIENHPKLITASLDDIKSTVEYIMSMDFTTTEFRRIVGMCPDVLTTHVSDIIPVFTFLLREAHVKGSDIKRVIHRRPRLLVCSVNNQLRPTLYYLQSIGIEEVSRHTDLLSCSVQEKLIPRIDYFENIGFSRRDATTMFRRFPPLFCYSIKNNLEPKYNYFVVEMGRDLKELKEFPQYFSFSLENRIKPRHKRCIEMGVCFPLPVLLKMTEMSFQNRLDLCVNSSTPLKKSPLWCNACDIQV* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2003 369 SMART mt_12 263 295 IPR003690 GO:0003690|GO:0006355
Amo17g2003 369 SMART mt_12 197 228 IPR003690 GO:0003690|GO:0006355
Amo17g2003 369 SMART mt_12 126 156 IPR003690 GO:0003690|GO:0006355
Amo17g2003 369 SMART mt_12 296 327 IPR003690 GO:0003690|GO:0006355
Amo17g2003 369 SMART mt_12 161 192 IPR003690 GO:0003690|GO:0006355
Amo17g2003 369 SMART mt_12 229 258 IPR003690 GO:0003690|GO:0006355
Amo17g2003 369 Pfam mTERF 112 188 IPR003690 GO:0003690|GO:0006355
Amo17g2003 369 Pfam mTERF 233 342 IPR003690 GO:0003690|GO:0006355
Amo17g2003 369 PANTHER OS03G0360600 PROTEIN 111 355 - -
Amo17g2003 369 Gene3D Transcription termination factor 3, mitochondrial 176 348 IPR038538 -
Amo17g2003 369 PANTHER CGI-12 PROTEIN-RELATED 111 355 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2003 Amo-Chr17 102661300 102662744 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo17g2003 mTERF 3.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2003 K15032 - ahf:112704905 741.495