Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2002 ATGGCAAATAAATTTAAAATCCCGCCTAAACCCCTGCCCCTCCCTTCGCTCTCTCCTTTTCCRCTTTGGATTTCATTTCGTTCGCAATTGAATTTCAATTTCCCAAAGGGCCTTAATATTTCCTCGCATTTTTTCCCTCCCGTCATGAAAGGTGCAAAGTCCAAAGCCGAATCCAAGAGAGGCGATGCCAAGCTTGCCGTGAATAAGAAAGGAACTCCGGCCACGAAGGGCGGTAGGAAAACCGGCAAGGGAAAAGCCGCCAAAGACCCTAACAAGCCAAAGAGGCCACCGAGTGCTTTCTTCGTTTTCATGGAAGAATTTAGGAAACAGTTCAACAAGGATCATCCTGAAAACAAAGCAGTATCTGCTGTGGGCAAGGCTGCTGGAGCTAAATGGAAACAAATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCAGAGAAACGAAAGCAGGACTATGAGAAGAACATGAGAGCCTACAACAAAAAACAGGCTGAAGGTCCTACTGGTGGAGATGAAGAGGAATCAGACAAGTCAATATCCGAGGTCAATGATGAAGATGATGATGAGGATGAAGCGGCGAGAGAAGACGATGATGAGTAG 606 0.4587 MANKFKIPPKPLPLPSLSPFPLWISFRSQLNFNFPKGLNISSHFFPPVMKGAKSKAESKRGDAKLAVNKKGTPATKGGRKTGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKDHPENKAVSAVGKAAGAKWKQMSDAEKAPYVAKSEKRKQDYEKNMRAYNKKQAEGPTGGDEEESDKSISEVNDEDDDEDEAAREDDDE* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2002 201 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 49 197 - -
Amo17g2002 201 MobiDBLite consensus disorder prediction 113 201 - -
Amo17g2002 201 MobiDBLite consensus disorder prediction 53 99 - -
Amo17g2002 201 SUPERFAMILY HMG-box 80 167 IPR036910 -
Amo17g2002 201 Pfam HMG (high mobility group) box 93 162 IPR009071 -
Amo17g2002 201 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 93 162 IPR009071 -
Amo17g2002 201 Gene3D High mobility group box domain 77 171 IPR036910 -
Amo17g2002 201 Coils Coil 144 164 - -
Amo17g2002 201 MobiDBLite consensus disorder prediction 142 178 - -
Amo17g2002 201 MobiDBLite consensus disorder prediction 179 201 - -
Amo17g2002 201 CDD HMGB-UBF_HMG-box 93 159 - -
Amo17g2002 201 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 49 197 IPR031061 -
Amo17g2002 201 SMART hmgende2 92 163 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2002 Amo-Chr17 102563210 102564963 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Amo17g2002 HMG_box 3.1e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2002 K25507 - gmx:100500173 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2002 17 102563210 102564963 Amo17g2002 17 102563210 102564963 ECH
Amo08g0274 08 4977735 4980527 Amo17g2002 17 102563210 102564963 hybridization