Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2001 ATGGAGGCAGAGCAAGCCACATCAGGAGCTAACAATGGAATCGGAAGCTTATACATGAAAGTGATGACCGATGAACAACTGGAAATGCTGCGGCAACAGATATCGGTCTACGCCACCATCTGCGACCGCCTGGTTGAGATGCACAAATCTATCACCACTCAGCAAGACCTCGCAGGAATGAGGTTAGGGAATTTATACTGTGATCCTCTCATGGCGTGCTCCGGCCACAAGATAACGGCGAGGCAGCGGTGGACGCCGACGCCTCTGCAACTTCAAATTCTGGAGCGTATATTTGACGAAGGGAATGGCACTCCAAACAAGCAGAAGATCAAGGAGATAACCCTTGAGCTTGGCCAACATGGCCAGATTTCAGAGACTAATGTCTATAATTGGTTCCAGAATCGAAGAGCACGTTCCAAGCGCAAGCAACTGCTTCCCTCCCAGAATAATCTAGAAGCAGAAGCAGATGTAGAAGTAGAGTCTCCAAAGGAGAAAAAGATGCCAGAAATTCAAGAAACAATTCATCAAGTTCCTTCCTATGAGAACTTGTCCCACAGTCCTGATATAGGATTTGAACAACTGATGAGTAAACTAGAAACTGGAGGCTGCTATGGTTCTTATTTTCTTTAG 630 0.4635 MEAEQATSGANNGIGSLYMKVMTDEQLEMLRQQISVYATICDRLVEMHKSITTQQDLAGMRLGNLYCDPLMACSGHKITARQRWTPTPLQLQILERIFDEGNGTPNKQKIKEITLELGQHGQISETNVYNWFQNRRARSKRKQLLPSQNNLEAEADVEVESPKEKKMPEIQETIHQVPSYENLSHSPDIGFEQLMSKLETGGCYGSYFL* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2001 209 Gene3D - 82 145 - -
Amo17g2001 209 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 209 IPR044559 GO:0003700
Amo17g2001 209 ProSiteProfiles 'Homeobox' domain profile. 77 142 IPR001356 GO:0003677
Amo17g2001 209 SMART HOX_1 79 146 IPR001356 GO:0003677
Amo17g2001 209 Coils Coil 208 209 - -
Amo17g2001 209 CDD homeodomain 81 143 IPR001356 GO:0003677
Amo17g2001 209 SUPERFAMILY Homeodomain-like 80 143 IPR009057 -
Amo17g2001 209 Pfam Homeodomain 81 141 IPR001356 GO:0003677
Amo17g2001 209 MobiDBLite consensus disorder prediction 144 167 - -
Amo17g2001 209 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2001 Amo-Chr17 102510874 102512297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2001 17 143 Wox Gene Family AT4G35550 76.378 1.97e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Amo17g2001 Homeodomain 5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2001 - - pvu:PHAVU_009G012200g 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2001 17 102510874 102512297 Amo17g2001 17 102510874 102512297 ECH
Amo08g0283 08 5172163 5173695 Amo17g2001 17 102510874 102512297 hybridization