Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1999 ATGATGGCTTCAAGCTGGGATGGAAGCAATGACCCTGGCAGCCAGTCAGATGATAGCTTTCATTTCGATAGGTTGCACATTGAGCCCATTTATGATGCTTTCGTGTGTCCTCTGACAAAGCAAGTTATGCGGGACCCTGTAACGTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAGTGGTTCAAGGAATGCAAGGAAAGTGGACGGCAACTTGTTTGTCCGTTGACTCTGCAGGAGTTAAAGAGTGCAGAACTGAATCCAAGTATGGCTCTGCGAAACACCATTGAAGAGTGGACGGCCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGCTCGTTGAATATGGGAAGTCCAGAAARTGATACGCTTCATACTTTAAAGTATATCCAGCACATATGCCGAAGAAGCAGGTCAAATAAGCATAATGTCCGCRGTGCAGGGCTCATACCCATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGATACGATGTAGAGCTTTGGAAACTCTTAGAGTTGTGGTAGAGGAAGACGATGAAAATAAGGAATTGTTGGCKGAAGGTGACACTGTGCGTACAGTTGTAAAATTCCTGTCTCATGAGCTTTCAAAAGAAAGAGAGGAAGCTGTCTCTTTGCTTTATGAGCTCTCAAAATCTGAAACCCTATGTGAGAAGATTGGTTCAATTAATGGAGCTATTCTTATATTAGTTGGAATGACAAGCAGCAATTCAGAAGATCTTTCTACTGTTGAGAAGGCTGATAAAACATTGGAGAATCTGGAGAAGTGTGAGAATAACGTACGGCAGATGGCTGAAAATGGTAGATTGAAGCCTCTTCTGACCCAACTTCTTGAAGGTCCACCGGAAACAAAACTTTCAATGGCTGGATTCCTTGGTGAGCTGGTTTTGAACAATGACGTCAAAGTCCATGTTGCTAGAACTGCAGGTTCATCTTTGATCAATATAATGAAAAGTGGTAATATGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCGTGCGAGCCAAGTGCAAAGGTTCTTATCGAAGCGGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCAAATCAGCTTCCAACACGATTAAAAGAGGTTGCTGCTACAATTCTTGCCAATGTGGTGAACTCAGGGGAAGACTTTGACTCAATTCCTTTCGGACCTGGTCACCAAACTCTGGTCTCAGAGGACATAGTTCATAATCTACTTCATCTCATAAGCAATACTGGTCCAGCAATTGAGTGCAAACTTCTCCAAGTTCTTGTCGGACTCACTAATTCTCCAACCACAGTTCTGAGTGTGGTTTCTGCTATCAAAAGTTCCGGCGCCACTATCAGTTTAGTTCAATTCATTGAGGCTCCACAGAAAGATCTGCGTGTAGCTTCCATAAGACTTCTTCGAAATCTCTCACCCCACATGGGTCAGGAACTAGCCGATGCTCTACGTGGCTCAGTCGGACAGCTTAGTGGTCTAGTTAAAGTCATATCAGAGAGTACAGGAATCACTGAAGAGCAGGCAGCAGCTGTTGGCCTTTTAGCGGATCTTCCTGAGAGGGATTTGGGACTCACAAGGCAGCTGCTAGATGAAGGTGCATTTCAGCTGGTCATATCTAGGGTGATTGCCATCAGGAAGGGTGAGATCAGGAGCAGTCGCTTCATGACACCATTTCTTGAAGGGCTTGTGAAGATYCTTGCAAGGGTTACATATGTCATMGATCAGGAGCCRGAAGCCCTTGCACTCTGTCGTGACCACAATCTTGCTGCATTGTTTATTGAAATGCTTCAAACTAACGGACTTGATAATGTACAGATGGTTTCCGCCACAGCTTTGGAGAATCTGTCCCAAGAGTCGAAAAATTTAACAAAGTTGCCTGATCTGCCACCGCCAGGTGTTTGTGCTTCAATCTTTACATGCTGTTACACACAACCGGTCATTACTGGACTGTGTAGGATTCACAGAGGGTTGTGCTCTTTAAAAGAAACATTTTGCCTTTTTGAAGGGCAAGCAGTCCTTAAGTTGGTAGCTCTACTGGACCACACGAATGTGAATGTAGTTGAGGCAGCACTTGCAGCCTTATCTACTCTTATAGATGATGGAGTGGATATTGAACAAGGAGTACAGGTGTTGTTGGATGCCGAGGGAGTGAGGCCTATACTCGATGTGTTACTCGAGAAACGGACAGAGAACTTGCGGAGGAGGGCAGTCTGGGCAGTGGAGAGATTGTTGCGAACAGAGGATATAGCCTATGAAGTTTCAGGCGATCAAAATGTGAGCACTGCACTTGTGGATGCTTTCCAGCATGGCGACTACCGAACAAGGCAGATTGCGGAGCGTGCCCTCAAGCATGTTGATAAGATACCAAACTTCTCCGGAATCTTCCCAAACATGGGAGGAGCGTAA 2448 0.4498 MMASSWDGSNDPGSQSDDSFHFDRLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKESGRQLVCPLTLQELKSAELNPSMALRNTIEEWTARNEAAQLDMARRSLNMGSPEXDTLHTLKYIQHICRRSRSNKHNVRXAGLIPMIVDMLKSSSRKIRCRALETLRVVVEEDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSNSEDLSTVEKADKTLENLEKCENNVRQMAENGRLKPLLTQLLEGPPETKLSMAGFLGELVLNNDVKVHVARTAGSSLINIMKSGNMQSREAALKALNQISCEPSAKVLIEAGILSPLVNDLFAVGPNQLPTRLKEVAATILANVVNSGEDFDSIPFGPGHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTNSPTTVLSVVSAIKSSGATISLVQFIEAPQKDLRVASIRLLRNLSPHMGQELADALRGSVGQLSGLVKVISESTGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFQLVISRVIAIRKGEIRSSRFMTPFLEGLVKILARVTYVIDQEPEALALCRDHNLAALFIEMLQTNGLDNVQMVSATALENLSQESKNLTKLPDLPPPGVCASIFTCCYTQPVITGLCRIHRGLCSLKETFCLFEGQAVLKLVALLDHTNVNVVEAALAALSTLIDDGVDIEQGVQVLLDAEGVRPILDVLLEKRTENLRRRAVWAVERLLRTEDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMGGA* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1999 815 Gene3D - 572 803 IPR011989 -
Amo17g1999 815 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 2 811 - -
Amo17g1999 815 MobiDBLite consensus disorder prediction 1 20 - -
Amo17g1999 815 MobiDBLite consensus disorder prediction 1 16 - -
Amo17g1999 815 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Amo17g1999 815 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Amo17g1999 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 116 IPR013083 -
Amo17g1999 815 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 811 - -
Amo17g1999 815 Gene3D - 123 319 IPR011989 -
Amo17g1999 815 Coils Coil 257 277 - -
Amo17g1999 815 SUPERFAMILY RING/U-box 25 111 - -
Amo17g1999 815 CDD RING-Ubox_PUB 34 81 IPR045210 -
Amo17g1999 815 Gene3D - 320 487 IPR011989 -
Amo17g1999 815 SUPERFAMILY ARM repeat 127 444 IPR016024 -
Amo17g1999 815 SMART arm_5 717 759 IPR000225 GO:0005515
Amo17g1999 815 SMART arm_5 672 713 IPR000225 GO:0005515
Amo17g1999 815 SMART arm_5 140 180 IPR000225 GO:0005515
Amo17g1999 815 SMART arm_5 446 487 IPR000225 GO:0005515
Amo17g1999 815 SMART arm_5 182 222 IPR000225 GO:0005515
Amo17g1999 815 SMART arm_5 347 392 IPR000225 GO:0005515
Amo17g1999 815 SMART arm_5 590 631 IPR000225 GO:0005515
Amo17g1999 815 SMART arm_5 267 307 IPR000225 GO:0005515
Amo17g1999 815 SUPERFAMILY ARM repeat 457 799 IPR016024 -
Amo17g1999 815 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1999 Amo-Chr17 102490692 102494643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1999 3 813 U-box Gene Family AT1G76390 64.496 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1999 - - adu:107460240 1565.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1999 17 102490692 102494643 Amo17g1999 17 102490692 102494643 ECH
Amo08g0286 08 5185929 5190125 Amo17g1999 17 102490692 102494643 hybridization