Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1995 ATGATTTCTGGAGGGACTATGCATGTGGGTATGGACTTTCCTCATCAATTTACTATGCTAGAAGGTGAAAATGATAAAGGAAATGTATTAGTTATGGAAGATGAGAAATCAGAAGATTTGAGTAATGTAAGACAAATGGCAAGGGGCAAACCTCCACGCCACCATGGCTCCGGCATGAGACATAGTATTAGCACCACTAGATTGGTTGCTGCACCAGATTTGAGTTTGGATGTGGAGGTTACAGGRTGCAAGTCATCTTCTGAAGAMAACACAGAGTTTCTACCCATATTTCGGTCAGGAAGTTGTGCTGAAAAAGGACCTAAAGAATATATGGAAGATGAACATATATGCATAGATGATCTTATTCAGCATCTAGGTTCATCTTCMAATTTTCCTTTTACAGGAGCTTTCTATGGTGTGTTTGATGGGCATGGAGGTACAGATGCAGCTTCTTTTATAAGAAATAACATCCTTAGATTCATACTTGAGGACTCCCATTTTCCAACTTGCGTGGCAAAGGCAATTACAAGTGCTTTCTTGAAAGCTGATTATGCATTTGCAGATTCTAGTTCGTTAGATATCTCCTCTGGAACCACTGCTTTAACAACTCTTGTTAATGGAAGGACCATGATGGTCGCCAATGCCGGGGACTGTAGAGCTGTACTGGGGAGGCGAGGTAGAGCAGTCGAGATGTCAACAGACCAGAAACCAAATCGTATTTCGGAGAGGCTGAGGATTGAGAGGCTTGGTGGTGTGGTATACGATGGATACTTGAACGGGCAACTGTCAGTTTCCCGTGCTCTAGGAGACTGGCACATGAAAGGTCCCAAGGGCTCTGCATGCCCTCTGAGCGCGGAACCTGAGTTGCAAGAAATCAACCTGACTGAGGACGACGAGTTCTTGATAATGGGTTGTGATGGATTATGGGACGTGATGAGTAACCAATGCGCTGTGACAATGGCAAGGAAAGAATTAATGATACAYAATGATCCTGAAAGGTGTTCAAGAGARCTGGTCAGAGAGGCTCTTAAGCGCAACTCTTGTGATAACTTAACAGTGATCGTGGTGTGTTTCTCACAAGATCCTCCTCCAAGAATAGAGACACCACCTTCTCGAGTCAGAAGGAGCATATCTGCAGAAGGCCTCAATTTACTCAAGGGTGTATTGGACTCTTAG 1176 0.4371 MISGGTMHVGMDFPHQFTMLEGENDKGNVLVMEDEKSEDLSNVRQMARGKPPRHHGSGMRHSISTTRLVAAPDLSLDVEVTGCKSSSEXNTEFLPIFRSGSCAEKGPKEYMEDEHICIDDLIQHLGSSSNFPFTGAFYGVFDGHGGTDAASFIRNNILRFILEDSHFPTCVAKAITSAFLKADYAFADSSSLDISSGTTALTTLVNGRTMMVANAGDCRAVLGRRGRAVEMSTDQKPNRISERLRIERLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSAEPELQEINLTEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPERCSRELVREALKRNSCDNLTVIVVCFSQDPPPRIETPPSRVRRSISAEGLNLLKGVLDS* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1995 391 CDD PP2Cc 97 358 IPR001932 -
Amo17g1995 391 SUPERFAMILY PP2C-like 91 359 IPR036457 -
Amo17g1995 391 ProSiteProfiles PPM-type phosphatase domain profile. 98 358 IPR001932 -
Amo17g1995 391 SMART PP2C_SIG_2 113 358 IPR001932 -
Amo17g1995 391 PANTHER PROTEIN PHOSPHATASE 2C 7 380 IPR015655 GO:0004722|GO:0006470
Amo17g1995 391 ProSitePatterns PPM-type phosphatase domain signature. 137 145 IPR000222 GO:0043169
Amo17g1995 391 SMART PP2C_4 88 356 IPR001932 -
Amo17g1995 391 Gene3D - 77 362 IPR036457 -
Amo17g1995 391 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 7 380 - -
Amo17g1995 391 Pfam Protein phosphatase 2C 99 350 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1995 Amo-Chr17 102462538 102464988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1995 9 390 PP2C-type Phosphatase Gene Family AT2G33700 70.312 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1995 K14803 - gmx:100778015 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1995 17 102462538 102464988 Amo17g1995 17 102462538 102464988 ECH