Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1991 ATGAATTTGTTTTTTATTCTTTGTCCGTTGTTGTTGTTGTTGTTCTTCCCCTTTTTGGGAGTATCTGCTGCTGCAAATGTCTCGTCCTCAAGACCTTCTGTCGCGAACATTGGGGCGATCTTCACCTTCAATTCCACAATTGGGAGAGTGGCTAAAATTGCCATGGAGCAAGCAGTGAAGGATGTCAATGCCAACACCAGCATCCTTCATGGAACAAAGCTTGTCCTCCAAATGCAAGATTCCAATTGTAGTGGTTTCATGGGCATGGTTCAATCTTTGCGGTTCATGGAGACTGATGTAGCTGCTATAATAGGTCCCCAATCTTCTGTTGTAGCTCACATCATATCCCATGTTGCGAATGAGCTTCGAGTTCCTCTGGTGTCGTTTGCYGCCACAGATCCTACTCTTACCTCCCTGCAGTTCCCATTCTTTGTGAGGACAACACAGAGTGATYTGTATCAAATGACTGCRGTTGCGGAGATCATAGACTATTATGGTTGGAAGGAGGTGATTGCCATCTATTTAGATGATGATTATGGACGAAATGGTGTTTCTGTGTTGGATGATCAGCTGGCTGCTCGGCGCTGCAAAATATCCTACAAGGCTGCAATCAAATCTGGATCAGTTGACCGGGGAGAGATCACGAATTTGCTTGTGCAAGTGGCTCTGATGCAATCTCGGATCATTGTTCTTCATACAAATCCTGATTCTGGATTTATGGTCTTCAATGTGGCGCATTATCTTGGGATGACAACCAATGGCTATGTCTGGATAGCCACGGATTGGCTCTCATCTGTCTTGGATTCTACTTCTCTACCTTCAGAAACAATGGATATTCTTCAAGGAGTACTTGTTTTGCGCCAACATACACCCGATTCTGATAGAAAGAAATCATTTATCTCTACATGGAACAAGTTAACTGGCGGCTCTTTGGGGCTACATTCCTATGGTCTCTATGCTTATGATTCTGTCTTTCTGTTAGCGCACGCTCTCGATGCATTCTTTAGTCAGGGTGGGATTGTTTCGTGTACCAACTACACGAGTTTGCGCGATGATAAGCCTGGTGGTCTGAACCTTGATGCTATGAGCATTTTTGACAATGGAACACTTCTGCTGAAGAACATAGAGCAAAGTGATTTTCTTGGATTAACAGGTCATGTGAAATTTGCACCAGACAGATGCCTTGTTCGTCCTGCATATGATGTTATCAATGTGGTTGGAACTGGCATTCATCGGGTAGGTTACTGGTCGAACTATTCTGGTCTCTCAATTGTGCCTCCAGAGACATTGTATGCTAAGCCGGCTAATAAATCAAGTGCAAACCAGCACCTTCATAGTGTCATATGGCCTGGAGATACATTATCAAAACCCCGTGGATGGGTTTTCCCAAATAATGGAAGGCAATTGAGAATTGGTGTGCCTGTTCGAGTTGGTTTCCGCGAATTTGTTTCGCGGGTGCAGGGGACTGATATGTTTAAAGGTTTCTCTATTGATGTATTCACTGCAGCTGTGAACTTGTTACCATATGCTGTTCCATACCACTTTGTCCCATTTGGAAATGGCCGCGAGAATCCAAGCTACACAGAACTTGTCAATTTAATCACCACAGGTTACTTTGACGGTGCTGTTGGTGACATTGCCATCATCACGAATCGGACAAAGATCGTAGATTTCACACAGCCATATGCTGCATCTGGACTAGTTGTGGTGGCCCCTTTTAAGAAAATCAATTCTGGAGGATGGTCTTTCCTTCGGCCATTCACACCATTTATGTGGACTGTGACTGCTTGTTTCTTCTTTTTCATTGGAATAGTTGTATGGGTTCTGGAACACAGAATCAATGATGAGTTCAGAGGCCCACCAAAACAACAATTCATAACAATTTTATGGTTTAGCCTTTCAACTCTCTTCTTTTCCCATAGAGAGAATACCATGAGCACTCTCGGTAGATTGGTGGTTCTGATCTGGCTGTTTGTAGTGTTGATCATAAACTCCAGCTACACTGCAAGTTTAACATCCATACTCACTGTGCAGCAGCTATCTTCCCCTATCAGTGGAATMGATAGCTTAAAGAATAGTAATGAACRCATAGGATTCCAAGTGGGTTCATTCGCGGAGCACTATTTGGTTGAGGACATCGGGATATCCGAAAATAGACTCGTTCGCCTAGGATCTCCAGASGCATATGCTAAGGCACTCCAACTTGGTTCTAAGAATGGAGGTGTTGGTGCCATTGTTGATGAAAGACCATACATTGAAATCTTCTTATCAACACAATGCACATTCAAAATTGTAGGCCAGGAGTTCACCCGAAGTGGCTGGGGTTTTGCATTCCCTCGCGACTCCCCATTAGCCGTGGATTTGTCAACTGCTATTCTACAACTTTCGGARACAGGGGATCTGCAGCGGATTCATGATAAGTGGATGACAAGAAGCAGCTGTAGTTTAGATAATGCCGAGATTGATTCGGATAGGCTTCAGTTGAAAAGCTTCTGGGGACTGTTCCTCCTTTGTGGWSTGGCTTGCTTCATAGCTCTTGTCATACATTTTGTGCAAATTATGGTGCGGATGTGGCATGCACCTCCTCCTGAAGCTGCATCTAATGGTAGCTCCATTTCTGGTCGTTTTCAAAGGTTTCTGTCACTGATTGATGAGAAGGAAGAGTCACCAAGGAGTGAGAGAAGAAAGAGGAACGGAGATGAAGGATCTGCTGCTGATCATCAACTTGATGGGAGGCACACAAAGAAGATACAGTTTGATTTAACACCCAACTCAAACAGATAA 2784 0.4375 MNLFFILCPLLLLLFFPFLGVSAAANVSSSRPSVANIGAIFTFNSTIGRVAKIAMEQAVKDVNANTSILHGTKLVLQMQDSNCSGFMGMVQSLRFMETDVAAIIGPQSSVVAHIISHVANELRVPLVSFAATDPTLTSLQFPFFVRTTQSDLYQMTAVAEIIDYYGWKEVIAIYLDDDYGRNGVSVLDDQLAARRCKISYKAAIKSGSVDRGEITNLLVQVALMQSRIIVLHTNPDSGFMVFNVAHYLGMTTNGYVWIATDWLSSVLDSTSLPSETMDILQGVLVLRQHTPDSDRKKSFISTWNKLTGGSLGLHSYGLYAYDSVFLLAHALDAFFSQGGIVSCTNYTSLRDDKPGGLNLDAMSIFDNGTLLLKNIEQSDFLGLTGHVKFAPDRCLVRPAYDVINVVGTGIHRVGYWSNYSGLSIVPPETLYAKPANKSSANQHLHSVIWPGDTLSKPRGWVFPNNGRQLRIGVPVRVGFREFVSRVQGTDMFKGFSIDVFTAAVNLLPYAVPYHFVPFGNGRENPSYTELVNLITTGYFDGAVGDIAIITNRTKIVDFTQPYAASGLVVVAPFKKINSGGWSFLRPFTPFMWTVTACFFFFIGIVVWVLEHRINDEFRGPPKQQFITILWFSLSTLFFSHRENTMSTLGRLVVLIWLFVVLIINSSYTASLTSILTVQQLSSPISGIDSLKNSNEXIGFQVGSFAEHYLVEDIGISENRLVRLGSPXAYAKALQLGSKNGGVGAIVDERPYIEIFLSTQCTFKIVGQEFTRSGWGFAFPRDSPLAVDLSTAILQLSETGDLQRIHDKWMTRSSCSLDNAEIDSDRLQLKSFWGLFLLCGXACFIALVIHFVQIMVRMWHAPPPEAASNGSSISGRFQRFLSLIDEKEESPRSERRKRNGDEGSAADHQLDGRHTKKIQFDLTPNSNR* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1991 927 MobiDBLite consensus disorder prediction 884 917 - -
Amo17g1991 927 Gene3D - 150 422 - -
Amo17g1991 927 MobiDBLite consensus disorder prediction 884 927 - -
Amo17g1991 927 Pfam Receptor family ligand binding region 52 407 IPR001828 -
Amo17g1991 927 Pfam Ligand-gated ion channel 811 841 IPR001320 GO:0015276|GO:0016020
Amo17g1991 927 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 908 - -
Amo17g1991 927 CDD PBP1_GABAb_receptor_plant 36 426 IPR044440 -
Amo17g1991 927 Gene3D - 757 816 - -
Amo17g1991 927 SMART GluR_14 470 811 IPR001320 GO:0015276|GO:0016020
Amo17g1991 927 PIRSF IGluLR_plant 3 926 IPR017103 -
Amo17g1991 927 Gene3D - 578 712 - -
Amo17g1991 927 Gene3D - 53 397 - -
Amo17g1991 927 CDD GluR_Plant 467 808 - -
Amo17g1991 927 PANTHER GLUTAMATE RECEPTOR 3.3 22 908 - -
Amo17g1991 927 SUPERFAMILY Periplasmic binding protein-like I 30 461 IPR028082 -
Amo17g1991 927 SUPERFAMILY Periplasmic binding protein-like II 445 811 - -
Amo17g1991 927 Pfam Bacterial extracellular solute-binding proteins, family 3 489 810 IPR001638 -
Amo17g1991 927 Gene3D - 464 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1991 Amo-Chr17 102419565 102423774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1991 10 906 Ion Channels AT1G42540 63.696 0.0 1226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1991 K05387 - gmx:102661260 1471.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1991 17 102419565 102423774 Amo17g1991 17 102419565 102423774 ECH