Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1980 ATGTCGGGATCGGAGATGGGAAGAAGAGAAGGCTTCACCGTTGGGCTTCACAGCCATAACAGCATGCGTTTGGACTTTTCTGATGGCCCTGCTCTCTACAGCAACAACAACAACAACCCTCTTGCGCCACCTTCTGCTTCTCCAACTTACCACCCTTCCACCGCAGTCACCGCTGCACCTATCAACATCAATGGCAGCGCGGTTGGCGGCATCGAATCGTTGGCGGCGCTGCCACAGGGCGGCCACATCGGGAGTAGCTCTGAGCCGAAGAAGAAGAGAGGGAGGCCAAGGAAATACGTACCGGATGGTGGCGGCGTAGGGTTAGGGTTGAATCCAGATTCTTCTGCTCCTGGTATGACCGTTAACCATAGCCAGAACCAGAATCCGAATCTGAATTCGAGCTTGAACCAGAATCAGTCCGGTGGCGGAGCTATGTCGCCGGGAATTGCTTCCGCCACACCTAATTCTAATTCCGGGAAGAAAAGGGGAAGGCCTCGTGGCTCTCTCAACAAGCATCCTCACTTAAAGGGTCTTGGATTGGCAAAACTTACTTTCACTCCGCATGTTCTTACTGTGAAATCTGGAGAGGATCTGGGAGTAAAGGTTACGTCCATCTCCATGGATGGTCCAAGAAATATTTGTATCTTAACAGCAAATGGAACCATATCTAATGTAACACTTAGCCAACCTTCGATACCTGGAGGAACTGTGACCTATGAGGGACGATTTGAGATCCTGGCACTCTGTGGTTCTTTTCTTCTTTCTGAAAATGGTCAGTTCCAAAGAACTGGTTCTTTAAGTCTGACCTTGTCTGGGCCTGATGGTCGGGTTATGGGTGGTGCAATCGCAGGTGTTTGTGTAGCTGCTTCCCCAATTCAGATAGTTTTCGCAAGCTTCCTTGTAGATGGTGGTTACAAGAAAATGAAGTCATCGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGAACCAGATGGGGACCTTACCTTCCTCCCCTAATGTTCTCCCGGCTGGTCAAAGCAGCTCGCCATCGCATGGCACTCTTAGTGAATCTTCTGGTGGAGCCGGCAGCCCACTTAACCTGAGTACAGATGTTTGCAATAACAATAACACCCCACAAGGAATTTCCGGAATGCCCTGGAAATGA 1161 0.5004 MSGSEMGRREGFTVGLHSHNSMRLDFSDGPALYSNNNNNPLAPPSASPTYHPSTAVTAAPININGSAVGGIESLAALPQGGHIGSSSEPKKKRGRPRKYVPDGGGVGLGLNPDSSAPGMTVNHSQNQNPNLNSSLNQNQSGGGAMSPGIASATPNSNSGKKRGRPRGSLNKHPHLKGLGLAKLTFTPHVLTVKSGEDLGVKVTSISMDGPRNICILTANGTISNVTLSQPSIPGGTVTYEGRFEILALCGSFLLSENGQFQRTGSLSLTLSGPDGRVMGGAIAGVCVAASPIQIVFASFLVDGGYKKMKSSNQNQNQNQNQNQNQNQNQMGTLPSSPNVLPAGQSSSPSHGTLSESSGGAGSPLNLSTDVCNNNNTPQGISGMPWK* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1980 386 SUPERFAMILY AF0104/ALDC/Ptd012-like 185 300 - -
Amo17g1980 386 MobiDBLite consensus disorder prediction 20 53 - -
Amo17g1980 386 Pfam Plants and Prokaryotes Conserved (PCC) domain 187 299 IPR005175 -
Amo17g1980 386 MobiDBLite consensus disorder prediction 30 53 - -
Amo17g1980 386 MobiDBLite consensus disorder prediction 79 174 - -
Amo17g1980 386 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10 71 359 - -
Amo17g1980 386 MobiDBLite consensus disorder prediction 115 163 - -
Amo17g1980 386 MobiDBLite consensus disorder prediction 308 386 - -
Amo17g1980 386 Gene3D - 187 319 - -
Amo17g1980 386 ProSiteProfiles PPC domain profile profile. 181 321 IPR005175 -
Amo17g1980 386 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 71 359 IPR039605 GO:0003680
Amo17g1980 386 CDD DUF296 186 299 IPR005175 -
Amo17g1980 386 SMART AT_hook_2 159 171 IPR017956 GO:0003677
Amo17g1980 386 SMART AT_hook_2 90 102 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1980 Amo-Chr17 102010857 102014368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1980 28 386 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 44.293 2.43e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1980 - - ahf:112705741 705.671