Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1978 ATGATGATGATGATGATGCTATCAATGGAAGAGCTAGCGTGTGAGCTGAGTGATCATGAAAAGAGAAACGCTCAAGGTTTGCCACCGGGTTTCAGGTTTCACCCAACTGATCAAGAACTCATTACCTTCTATTTGGCTTCCAAGGTCTTCAATAATACAAATGCTACTACTGCTACTACTACTACTACTCATGTCAACTTTGTGGAGGTTGATCTCAATCGATGCGAGCCATGGGAACTTCCAGAAGTGGCAAAGATGGGGGAGAGAGAGTGGTATCTGTACAGTGTGAGAGACAGAAAATACCCAACGGGCCTCAGAACTAACAGAGCAACCGCTGCTGGGTACTGGAAGGCTACCGGCAAGGACAAGCAAGTCTACGGCGGCGGTGGCCTTGTTGGGATGAAGAAGACGTTGGTGTTCTACAAAGGGAGGGCCCCCCGCGGTCAGAAGACTAAATGGGTAATGCATGAGTTCCGGTTGGACCCTCACAGCTCTCCTTCCCTCTCTAAGGATGAGTGGGTAATATGCAGAATATTTCATAAAAGTGGGGAAAAGAGAGCTCCTACTACTACTCCTCCTCCTCTGCTACTTCATCATCAACTGCAGCATCAGCAACAACACGATCCATTATTATTATTCCAAACCCCATCATCCCTGTTCAATGACCATATCTCCCACTCTCATAATCATAATCAAAACCTCCTCTCGCCATTGCTTCATCCTTTCCCAATCCCTGAAGAAACCACTAAAACCAGATCATCAACAATTAACAGCAACCATTACCCTCCACCACCACCTTCCTCCCAACACTCGCTTAAGCTCAACAAGTCTACTAAATTAACAAAAACAGTGCCTCCTTCTCCATCATTCTTCCAATACCAACAGCTTCTAGAAGATTATCCCAACTTATTGCATTGGATCGACAGTGGTAATAACAATAATAATAACTGCAACGCTAATAATACTGCTAGTAGTGTTGAGATAATGGATGCTGCTGCTGCTGGCTTGATAGCATTCTCATCAGGAGGACCTTCACCTACTCCTAATAATAATAATAATAATAATAATAACAATGCTGAAATAATGATGATGTCTTCTTCTTCGGCTTCTATGCTGCACATACTCGACGATGCTCCTCTTGGGATTCAATCTTGGCCTCATCATCATCATCATCACCTTCTGTAA 1185 0.4397 MMMMMMLSMEELACELSDHEKRNAQGLPPGFRFHPTDQELITFYLASKVFNNTNATTATTTTTHVNFVEVDLNRCEPWELPEVAKMGEREWYLYSVRDRKYPTGLRTNRATAAGYWKATGKDKQVYGGGGLVGMKKTLVFYKGRAPRGQKTKWVMHEFRLDPHSSPSLSKDEWVICRIFHKSGEKRAPTTTPPPLLLHHQLQHQQQHDPLLLFQTPSSLFNDHISHSHNHNQNLLSPLLHPFPIPEETTKTRSSTINSNHYPPPPPSSQHSLKLNKSTKLTKTVPPSPSFFQYQQLLEDYPNLLHWIDSGNNNNNNCNANNTASSVEIMDAAAAGLIAFSSGGPSPTPNNNNNNNNNNAEIMMMSSSSASMLHILDDAPLGIQSWPHHHHHHLL* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1978 394 ProSiteProfiles NAC domain profile. 27 181 IPR003441 GO:0003677|GO:0006355
Amo17g1978 394 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 295 - -
Amo17g1978 394 Pfam No apical meristem (NAM) protein 28 160 IPR003441 GO:0003677|GO:0006355
Amo17g1978 394 SUPERFAMILY NAC domain 22 181 IPR036093 GO:0003677|GO:0006355
Amo17g1978 394 MobiDBLite consensus disorder prediction 230 273 - -
Amo17g1978 394 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 17 295 - -
Amo17g1978 394 Gene3D NAC domain 36 185 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1978 Amo-Chr17 101859077 101860716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1978 5 203 NAC Transcription Factor Family AT1G76420 64.356 9.96e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo17g1978 NAM 3.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1978 - - aip:107607453 674.47