Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1972 ATGACTCGTCCCTTGAGAATTTTAGGCGAGCGCAACTCGTCAACCACCGACAACGCCCCCTCCGTCGTCGACTCCGACTTCGTCGTCATCCTCGCCGCCCTCATCTGTGCTCTCATCTGCGTTCTCGGACTGGTCGCTGTAGCTCGCTGCGCTTGTCTCCGCCGCCTCCGCCTCTCATCCTCCTCCGCCGCCGCTACTCCCTCGCTTCCCGCAGCTGCCAACAAAGGTGTCAAGAAGAAGGTACTCAGCTCTCTCCCCAAGGTCACCGCCACAGTCGAGTCGGCTGGCAAGTTCTCCGACTGCGCGATCTGCCTGGCGGAGTTCACAGCCGGGGATGAGATCCGAGTGCTGCCTCAGTGTGGCCACGGCTTCCACGTGTCGTGTATCGACGCGTGGCTGAGGTCGCATTCATCGTGTCCATCGTGCCGTCAGATTCTGGTGGTTCCGAGATGCAACAAGTGCGGTGGTTTTCCAGCACCCGCGAGCTCGAGCACCACCGCCACCGCCTCTCAGCCACCGGAATCGGATTCCACATTTAAAGTAAGCGGCGATCATGCCAATAGGTTTTTACCTTAG 576 0.6007 MTRPLRILGERNSSTTDNAPSVVDSDFVVILAALICALICVLGLVAVARCACLRRLRLSSSSAAATPSLPAAANKGVKKKVLSSLPKVTATVESAGKFSDCAICLAEFTAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVPRCNKCGGFPAPASSSTTATASQPPESDSTFKVSGDHANRFLP* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1972 191 Pfam Ring finger domain 100 143 IPR001841 -
Amo17g1972 191 SMART ring_2 101 142 IPR001841 -
Amo17g1972 191 SUPERFAMILY RING/U-box 94 149 - -
Amo17g1972 191 CDD RING-H2_PA-TM-RING 100 143 - -
Amo17g1972 191 MobiDBLite consensus disorder prediction 162 182 - -
Amo17g1972 191 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 173 - -
Amo17g1972 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 147 IPR013083 -
Amo17g1972 191 PANTHER RING-H2 FINGER PROTEIN ATL8 1 173 - -
Amo17g1972 191 MobiDBLite consensus disorder prediction 162 191 - -
Amo17g1972 191 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1972 Amo-Chr17 101586638 101588394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1972 1 154 C3H Transcription Factor Family AT1G20823 65.854 6.19e-65 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1972 - - gmx:100794614 215.312