Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1939 ATGCATGTGTTAAAACTCACCTGTATCAGTGTTAAAGAAGAACGAAATATTTTGATTTTTGACCTTGATGGTGGTACTTTTGATGTGTCTGTCCTTAAGGTTAAAGATAAAGTCTTTGAAGTTAAGGCCACAGCAGGGAACACTCATCTTGGTGGAGAAGACTTTGATTACAGAATGGTAAATTACTTGGTACAAGAGTTCAAAAAGAAGAACAAAATGGATATTAGTAGGAACTCAAAACCCTTGAGAAGGTTGAAAATTGCATGTGAAAGAGCAAAAAGAACACTCTCCTTTGCTTTTGATGCTACTATTGAACTTGATGCTTTATATCAAGGCATTGATTTTTACTCATCAATCAGCCGTGCTAAGTTTGAGGAACTAAACATGGAACTCTTCAAAGAGTGCATTGATTTTTACTCATCAATCAGCCGTGCTAAGTTTGAGGAACTAAACATGGAACTCTTCAAAGAGTGTATGGAAATAGTAAATCATTGTCTCTATGATGCTAACATAGAAGTGTCTGATATACATGATGTTGTCCTTGTTGGAGGTTCTTCTAGAATTCACAAAATGCAGCAACTATTGCAAGAATTTTTCAGAGGGAAGCATCTTTGCAAGAGTATCAACCCTGATGAAGCTGTTGCTTATGGAGCAGGAGTTCAAGCTGCTTTATTGAGTGAAGACATTAAGGTAGCACTAGAACTTGTTCTAATGGATGTTATACCCTTATCACATGGTATAGGATTAGTAGGAGACCGAATGAATGTAGTGATTCCTAGGAATTCTACTATTCCTGCAAGGAGGACAAGAGGATACACAACTAAGCAAAATCTAAGGTACATTCAAAATGTGTTGAGGCATCAGTTTGCTGACCAAAAGTATTCATTGAAGTCATCATAA 900 0.3656 MHVLKLTCISVKEERNILIFDLDGGTFDVSVLKVKDKVFEVKATAGNTHLGGEDFDYRMVNYLVQEFKKKNKMDISRNSKPLRRLKIACERAKRTLSFAFDATIELDALYQGIDFYSSISRAKFEELNMELFKECIDFYSSISRAKFEELNMELFKECMEIVNHCLYDANIEVSDIHDVVLVGGSSRIHKMQQLLQEFFRGKHLCKSINPDEAVAYGAGVQAALLSEDIKVALELVLMDVIPLSHGIGLVGDRMNVVIPRNSTIPARRTRGYTTKQNLRYIQNVLRHQFADQKYSLKSS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1939 299 Pfam Hsp70 protein 137 279 IPR013126 GO:0005524|GO:0140662
Amo17g1939 299 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 223 283 IPR029047 -
Amo17g1939 299 Gene3D - 206 222 - -
Amo17g1939 299 SUPERFAMILY Actin-like ATPase domain 136 226 IPR043129 -
Amo17g1939 299 SUPERFAMILY Actin-like ATPase domain 12 138 IPR043129 -
Amo17g1939 299 Gene3D Actin; Chain A, domain 4 52 134 - -
Amo17g1939 299 PANTHER HEAT SHOCK PROTEIN 70KDA 135 279 IPR013126 GO:0005524|GO:0140662
Amo17g1939 299 Gene3D Actin; Chain A, domain 4 136 157 - -
Amo17g1939 299 PRINTS 70kDa heat shock protein signature 234 253 - -
Amo17g1939 299 PRINTS 70kDa heat shock protein signature 25 35 - -
Amo17g1939 299 PRINTS 70kDa heat shock protein signature 176 192 - -
Amo17g1939 299 PRINTS 70kDa heat shock protein signature 208 228 - -
Amo17g1939 299 Gene3D - 12 135 - -
Amo17g1939 299 Gene3D - 158 205 - -
Amo17g1939 299 PANTHER HEAT SHOCK 70 KDA PROTEIN 135 279 - -
Amo17g1939 299 PANTHER HEAT SHOCK 70 KDA PROTEIN 11 137 - -
Amo17g1939 299 PANTHER HEAT SHOCK PROTEIN 70KDA 11 137 IPR013126 GO:0005524|GO:0140662
Amo17g1939 299 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 234 276 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1939 Amo-Chr17 98359359 98360400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1939 14 274 Calmodulin-binding Proteins AT3G12580 58.397 1.36e-103 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1939 K03283 - gmx:102667578 330.102