Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1931 ATGCCCCCAATAACAACCATCCGCCATCCCATCAAAACCAATTCCCCCAATTCAATTCCCCTAACTACCCTAATCGTCCCTTCCAAGAAGAACACCCAATCTCCAACAACCACAATCAGCCATTTTCCCAATCCCCCAGGATTGCCAGCCGAATCCTCCCGGGCGATCCTTTCCCCCGCCGCAATTTTCCTCGTTTCGACACTGAAACACGCTGGGACCCTAACCCTGGCCGTAGGATCGCTCCCGACTGTCTCCTTCCGAGGAATTATACCCCCGTTGATCTTGACAATTCGATACGATCCCGATCGCTCCAGGTTGAGACTTGAGTATGAGTATGAGGGTAACCCTAGGAAGGATGAGGAGTTTGGTTGCGGCAGCGGTAATGATGCTAATTACCACAATTACCACCGCCGCGGCGTTGGGGATTTGCCACCCAGACACGACTTGCCCAACGGAGGCTTCGGCAGGGCGCCACCGGCGATGTCAAGGGAGATTAATATTGATTTGAAACCCGGGGGGTATGTTCGCGGGTATAGTGTGGAATTCGAGGATAAGATTCCCAGGGTTGGAAGAAGAGATGGGCATGGCGAAGGCAAGAGGTGGTTGAATGAGAGGAGGGGACCTAAGGAGTTGCCTGATTCACGGTTCGAATTGGGGACCGGCGAGATTGGTTTTGCTAAGAATGTTGATGATGATTTTCGCGTTGGGACGCGTGAGGAATATGGATGGGAATCGGGTAGATATAGTGGCAGAGGGAACAACAGGGAGTTTGGTCATGAATTATGGCGACCTTCTCTAAAGAAACAGGTTCAAAAGAAGAGTGCTCTTCTTAGGATCCAGAATGCAAAACCAAGTTATAGGAATCGTGAGATTGAACAATTACGGAATGCTGGTTATTCTGCTGAGTCTAACACTAATGATTTCAGGGGCAAGGAGCAGTGTGGGCATGTAGGTCATGGGATGAAACAAGAAGAAAGGGAAGGAAGTCCTGTGGAGCTTGATATCTCTTTTGAATCAAATTCCCTGGTTGCGAAGGCTATTGTGACCGCTTCGACTTCGACTGTTGTTAATGATACAAATATGAATTCTGTCTCTGATGCTGATTTAACTCCCTCAGAAAAGAGAAAAAAGGTTTCAGTATCCGATAGTGATTGTTCTGGTTTGGAAGCTGCAAAAGTATCTAGGGATGTTGTAACTTTGAATAGCTCATCATGCAAAGTGAATGACTGCTCTGGATCTGTGAATGATTTAAGCTTACAGAATAATGTTGTTAATCCTTGTTCTCAACCTTGCACCCGTGAGACTGATAGTGTGAAAAATGAGGTTGCAGGTGGAAGTACCAAAATTCACTCTGGTAAGTCCTCCCCAAGGGTTGTCAAGAAGAAAAAAGTTGTCAAGAGAGTAGTGAAGAAAGTTGTTGGAAATCCAAAATCTACAATGTCAAATTCACGATCAGTGAATAAGGTTCATGGATGTGTGCAACCTGATCGAGTCATACCTAGTTCTTCATCTGTCTCTGTTCCCAACAAAGTTGAACCTTGTCTGGAGCAGAAAAACATCACTGTAGACAAGATGTCAATGCCTGGCCATAGTTCATACAATTTATCAAAGGATCGGAATCAATTGCTTGAAGATAGAAATGGAGATCTAACCCTGCTGAGTTTGGGGCCACATTCCAGGTCACGAGAATGTGAAACTGATGAAGATTCAGATACTCAGAAAGGAGCCGCCAGGTTTGAAAGTGGCCTTAACATTCCAAATTCTCAATCTTGTGCTTCTACTGGTGAAGCTAAAAAGATTGATTCTGAGTGTTTAGATGCAAATAATTCTGTCCATGACTTGCGTAGAATGCCAGATACTAACATGGTTCCTGAATTATTAAATGGAAGTACTTCCAAAATCAATGATGTGGGTTGTGATATTAAACAGCTATGTCAGAATCAAGAGTCTCAATCATGTGAGAATTATTCAAATGTAAGATGTCCACAGAATGGGTTTGTTATAGATGTAGTAGATGACAGCGTTCTTAGTTCAGCTGACAATATTGGTAACTCAGATCGCACTAATACATATAACTCTGCTAGTAGCGTTTATGGCCTAATTTCTGGTGATCTTAAAGGATCTAAAGAGAAGCTTACAGTTACTGAATGTGGTCTTACTGGTGAATCTGGTTTTGGACTTATGGTCCCTACTATTATCACCAAGTATGCTATTTTGGAAGAAAATCCAGACGTGATCAACCCTGCATCAAGCAGCGCAATGTCTGCCCCTTCAAATTCAGGAAAAATTAAGATTCACTCTGGTACAGATTGCATACAAAATGCTATTGCTCTGACACAGGGTTCTTATAGTGGACCGGTCAATTTAGATGATGGTACCTCTGTTCAGTGTTCTGACATCACTAATGATGCTGTGAAGGATGTTTCCCCCTGTTACGCTGCCATATCTTCTGAGAATTGTTGCACGGAAGAGCCATTTTCAAGTTCTAATCTTTCTGTTGGATTTGGTGAAGGGGATACAAACAATATGAAAAAGAGAAAAGCTAGGACTCATTCAAAGTTTTTGCACTCAAAGATGGAGGGAATTTCTCCAAAACCTGTAAATTCAGTTAGCCATGCAAATGATTGGGATACTGCCTCAAGTGTGAAGGTGAAGGATGCATGTTGTTCAGAAGTTTTGGATCAATCTGTTCAAAGCTTAGATTCTAACCTGGAATCGTGCTTGAATGGGATCATTACTTTACATGGGAAAAAGGAGCTTTCAGAGGCTGAGCTTTGTGTTAGAGATAATGAGATTGATGATGCAAATTATCTTTCACTATTATCTAAAGGGATCAAAGTCACGACTACCTCTGAGTTGAGTGATGCAGTTGTGGTATCCAAATCTTGTGCGGATTTTCCTGTTTCTTTCAGTGATAAACAAGCGCCCGAAAAAGAAGTTGAATTGTCAAGCATGGATGTTCTGTTTAGTGCACAATCATTGTCATGTTCAGAGGATAGTAGGAAATTGTCTGACAATTTTGTTGGAGGTTCTTGTGACGCTAGATATGCAAATAATGAAACCATGAGTTCTGACCATTTTGAATTAAAGAACTCAGATTTTGCATCTTATTCACTTCGTGAGGACTTGGACATTCAGTTCCCATTGTTGGATGGTGAATGCAAAGAAAATGGCACTCAAATGCAAACTGACATTTTTACGTCTGGATTTAATAAGGGAGATATGAAGGACAGTTTAATTCATCAACAGAGCATTGTGTCCCATCCTTCCGATGGTGATTTGGAGGAGGATGCACCTGAAGCACCATCAGATGTGTGTTCTCAAGGGATATCGGAAGCACCTGAGAGAGGGAATTTAAATTGTACATCAATCCAAGATGAAAACAATTGTGGGGATATATCTGCAGTTGAACATGGTTCTGATTTGCCTACTTGTACTTCACCAATACAGCATACTAATAAGATTATGAAGTCAGCTAATGCAACTGGGCATAGTAACCCAGTTGAGAGGAATCTAATGCGACAATCATCCCAAGTCAACTCCAAGGTTTCAAATAATGGTCCAGTTTCTTATTTTTCAGAAAATGGGAGCAAAAATACCCTTGGAGGTGCCATGCCAAAAACTCAAAAGGGTCGTTCGTTCATCATTTCAAAGTCAAATTCAAAGACATCTGCCTCTTCAACCCATCTCTCAAATCCTCGAACTTGGCGACGTTCTGGTAATAATTCTCAAGGTTCTTTACCTGGAAACAAGCTTTCGCCAGGAAAATTTCTTCCCAAAAGGCAAATTCTAGATAGGAAAGGAAACTTTCAGAATACCTCTTACATTCGTAAAGGTAACAGTCTTGTAAGACAGCCTACTACAGTTTCTTTTACTCAGATCTCTTCTGTAAATAAGTCACCTTTGAGCTTAGATGAATTATCAAAGAGTACCAGATCTGGGAGCAGGATTGATGTGTCAGATCAACTGACCTTGAAAACAGGAGTAGCAGAGGTCCCTCAGCAGAGTCAGAGAAAACCTTCACTATCCATTGGCACATTATCAGAGGAAAATATATCTTCCCCATTGGTAGAACCTCCTTCCAGTGGTTGCTATGAAAATGCATCAGATCCTAGAAAACTGATAGATATCAATGATACACCAAACTCTTCCAAAGATGATTCAAATCAGTATGAAACTCCTGATAATCAAAGTAGTCCACTGAGTAAGCTGGAGAACCAAGTTGAAGCAAATGATGGACACATTTCTTCTTTCAGCACCAGGAGAATTGTATATACAAAGCCCAAAACAAATCAGTTGGTAGCGACTTCAAATTCTCGTGATGAGAAGTCCCAAACAGCCTTCTCTGAAGGCTACTACAAGAGGTGCAAAAATCAGTTAGTTAGGAATATGAACCAGACTGTTGCAGTGCCGAAAGCCACTCTAGATTCTGATGGTCAGGGGTCTTGTAAGGTGCTTTGCAACAGAAAGCTTAGTAAGAGGCAGTTACATAAAGTTGCTGGGAGGTCATTCAAATCTTTAAGAGCCTCATTAGTCTGGACATTATGTGGCAAAAAGTCACCTAAAAATGGCCATAATTCATGGCATTCTCAAAGGGTTTTGCCTCAGTTATTTCCATGGAAAAGACCAACATATTTAAGAAGCGTCATTCATAATTCTGCTTCATGTTCCAATAGTACCTTCTTATCAGCAGTTAGAAAGATGGATACTGTTTACACTAGGTCAACCCGTGGGTTTTCTCTTTGGAAATCCAAGGTATTAAGTGTTGGTGGGTCTAGTTTAAAATGGTCCAAATCCATTGAGAAGAACTCAAAGCAAGCTAATGAGGAGGCCACACTTGCTGTTGCTGCAGTAGAGAGGAAAAAGAGAGAGCAAAAAGAACGTATATTCCGTATTGGTTCAGTTCGCTACAAAATGGATCCTTCCAGGCGCACACTTCAGAGGATTTCAGGTGATGATGAATCCCTGTTGTCTGCCACTACTGATTCGGGCTTGGTTGTGAAAAGAGCTTACATTCCTAGGAGATTGGTGATTGGAAATGATGAATATGTCCGAATTGGAAATGGTAATCAGCTTATCAGAGACCCAAAAAAACGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCATACTGCCAGGCAACGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTTACTAGATTTGGGAAATGTAACAAGGAGGGTGGGAAATGCCCTTATGTTCATGATCCCTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTGACTCATAAGGTTATACCAGAGAGAATGCCAGATTGTTCTTATTTTCTGCAAGGCTTATGCACAAACCGAAATTGCCCATATAGACATGTCAATGTGAACCCTAAGGCTTCTGTTTGTGAAGGATTTCTCAAGGGTTATTGTGCTGATGGGAATGAGTGTAGGAAGAAGCACAGCTATATCTGTCCTACTTTTGAAGCAACGGGCACCTGTACGAAAGGAACCAGATGCAAGCTTCATCATCCCGAAAAACAAAAGGGAAAGAAAAGGAAGAGATCTGGAGATCAGAGTAATAGTAACAGCAGAGGGCGTTACTTTGCTTCTGTTCCGATTGATGTTTCTGAAGCTGGAATCGTAGTTATTCCAGGGCAACGTGATCAGAGTGATGATCTTGAAGGAGAACTTACTGACTACATCAGCCTTCAGGATGACTATACAAAAACTGTTGGTCAATCATTAGCGCTAACATTGTGCGACAGCGATTCCTTGAACTTGCAGTTGGAAGATTATGAAGTAAATGTCAAACCAACTCTTTTAATGAAATCAAAAGGCACGCCGCGATCTTCTCGGTCCAGTGTCCTGCAAATAACCTCTGGAGAACAGACAAATAAAATATACCCTACCGGGAGTATTTATGCAATTCCTGTGCTCCCCCCAAAGACTATTACCGCCCTTTTGACATCATTGATACACATCGATTGTCTCAAGGTAAGGAATGTATCATCAAATAGTCAATATGATTTTACGAGATCTAGTTTCATTCAAACGGATTTTAGGCAATTGAAAGGATCTTTTGATCAATCCAGAGATTCCATTAGGAACGAGGATTCGGAATATCATACATTGACCAATCAAAGAGATACAACTAAAAGAAAGATTGATTCTTTGTTCGGATCTTTCCTTTCTTCAAACGGAACGAACAAAGATAGAATCAGAGCGATTCCTTAA 6252 0.4141 MPPITTIRHPIKTNSPNSIPLTTLIVPSKKNTQSPTTTISHFPNPPGLPAESSRAILSPAAIFLVSTLKHAGTLTLAVGSLPTVSFRGIIPPLILTIRYDPDRSRLRLEYEYEGNPRKDEEFGCGSGNDANYHNYHRRGVGDLPPRHDLPNGGFGRAPPAMSREINIDLKPGGYVRGYSVEFEDKIPRVGRRDGHGEGKRWLNERRGPKELPDSRFELGTGEIGFAKNVDDDFRVGTREEYGWESGRYSGRGNNREFGHELWRPSLKKQVQKKSALLRIQNAKPSYRNREIEQLRNAGYSAESNTNDFRGKEQCGHVGHGMKQEEREGSPVELDISFESNSLVAKAIVTASTSTVVNDTNMNSVSDADLTPSEKRKKVSVSDSDCSGLEAAKVSRDVVTLNSSSCKVNDCSGSVNDLSLQNNVVNPCSQPCTRETDSVKNEVAGGSTKIHSGKSSPRVVKKKKVVKRVVKKVVGNPKSTMSNSRSVNKVHGCVQPDRVIPSSSSVSVPNKVEPCLEQKNITVDKMSMPGHSSYNLSKDRNQLLEDRNGDLTLLSLGPHSRSRECETDEDSDTQKGAARFESGLNIPNSQSCASTGEAKKIDSECLDANNSVHDLRRMPDTNMVPELLNGSTSKINDVGCDIKQLCQNQESQSCENYSNVRCPQNGFVIDVVDDSVLSSADNIGNSDRTNTYNSASSVYGLISGDLKGSKEKLTVTECGLTGESGFGLMVPTIITKYAILEENPDVINPASSSAMSAPSNSGKIKIHSGTDCIQNAIALTQGSYSGPVNLDDGTSVQCSDITNDAVKDVSPCYAAISSENCCTEEPFSSSNLSVGFGEGDTNNMKKRKARTHSKFLHSKMEGISPKPVNSVSHANDWDTASSVKVKDACCSEVLDQSVQSLDSNLESCLNGIITLHGKKELSEAELCVRDNEIDDANYLSLLSKGIKVTTTSELSDAVVVSKSCADFPVSFSDKQAPEKEVELSSMDVLFSAQSLSCSEDSRKLSDNFVGGSCDARYANNETMSSDHFELKNSDFASYSLREDLDIQFPLLDGECKENGTQMQTDIFTSGFNKGDMKDSLIHQQSIVSHPSDGDLEEDAPEAPSDVCSQGISEAPERGNLNCTSIQDENNCGDISAVEHGSDLPTCTSPIQHTNKIMKSANATGHSNPVERNLMRQSSQVNSKVSNNGPVSYFSENGSKNTLGGAMPKTQKGRSFIISKSNSKTSASSTHLSNPRTWRRSGNNSQGSLPGNKLSPGKFLPKRQILDRKGNFQNTSYIRKGNSLVRQPTTVSFTQISSVNKSPLSLDELSKSTRSGSRIDVSDQLTLKTGVAEVPQQSQRKPSLSIGTLSEENISSPLVEPPSSGCYENASDPRKLIDINDTPNSSKDDSNQYETPDNQSSPLSKLENQVEANDGHISSFSTRRIVYTKPKTNQLVATSNSRDEKSQTAFSEGYYKRCKNQLVRNMNQTVAVPKATLDSDGQGSCKVLCNRKLSKRQLHKVAGRSFKSLRASLVWTLCGKKSPKNGHNSWHSQRVLPQLFPWKRPTYLRSVIHNSASCSNSTFLSAVRKMDTVYTRSTRGFSLWKSKVLSVGGSSLKWSKSIEKNSKQANEEATLAVAAVERKKREQKERIFRIGSVRYKMDPSRRTLQRISGDDESLLSATTDSGLVVKRAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKEGGKCPYVHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCTNRNCPYRHVNVNPKASVCEGFLKGYCADGNECRKKHSYICPTFEATGTCTKGTRCKLHHPEKQKGKKRKRSGDQSNSNSRGRYFASVPIDVSEAGIVVIPGQRDQSDDLEGELTDYISLQDDYTKTVGQSLALTLCDSDSLNLQLEDYEVNVKPTLLMKSKGTPRSSRSSVLQITSGEQTNKIYPTGSIYAIPVLPPKTITALLTSLIHIDCLKVRNVSSNSQYDFTRSSFIQTDFRQLKGSFDQSRDSIRNEDSEYHTLTNQRDTTKRKIDSLFGSFLSSNGTNKDRIRAIP* 2084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1931 2083 Pfam Plant protein of unknown function (DUF825) 2004 2072 IPR008543 -
Amo17g1931 2083 MobiDBLite consensus disorder prediction 1330 1360 - -
Amo17g1931 2083 MobiDBLite consensus disorder prediction 552 573 - -
Amo17g1931 2083 MobiDBLite consensus disorder prediction 1217 1250 - -
Amo17g1931 2083 Gene3D - 1747 1801 - -
Amo17g1931 2083 PANTHER CCCH ZINGC FINGER 321 1950 - -
Amo17g1931 2083 ProSiteProfiles Zinc finger C3H1-type profile. 1720 1749 IPR000571 GO:0046872
Amo17g1931 2083 MobiDBLite consensus disorder prediction 1217 1258 - -
Amo17g1931 2083 MobiDBLite consensus disorder prediction 1330 1403 - -
Amo17g1931 2083 MobiDBLite consensus disorder prediction 1850 1872 - -
Amo17g1931 2083 Coils Coil 1608 1628 - -
Amo17g1931 2083 Gene3D - 1802 1865 - -
Amo17g1931 2083 MobiDBLite consensus disorder prediction 1376 1403 - -
Amo17g1931 2083 ProSiteProfiles Zinc finger C3H1-type profile. 1824 1852 IPR000571 GO:0046872
Amo17g1931 2083 ProSiteProfiles Zinc finger C3H1-type profile. 1775 1801 IPR000571 GO:0046872
Amo17g1931 2083 SMART c3hfinal6 1829 1851 IPR000571 GO:0046872
Amo17g1931 2083 SMART c3hfinal6 1720 1748 IPR000571 GO:0046872
Amo17g1931 2083 SMART c3hfinal6 1802 1828 IPR000571 GO:0046872
Amo17g1931 2083 SMART c3hfinal6 1775 1800 IPR000571 GO:0046872
Amo17g1931 2083 SMART c3hfinal6 1749 1773 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1931 Amo-Chr17 97411240 97421039 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo17g1931 DUF825 1.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1931 - - ahf:112706494 3618.17