Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1929 ATGCCCCCAATAACAACCACCCGCCATCCCATCAAAACCAATTCCCCCAATTCAATTCCCCTAACTACCCTAATCGTCCCTTCCAAGAAGAACACCCAATCTCCAACAACCACAATCAGCCATTTTCCCAATCCCCCAGGATTGCCAGCCGAATCCTCCCGGGCGATCCTTTCCCCCGCCGCAATTTTCCTCGTTTCGACACTGAAACACGCTGGGACCCTAACCCTGGCCGTAGGATCGCTCCCGACTGTCTCCTTCCGAGGAATTATACCCCCGTTGATCTTGACAATTCGATACGATCCCGATCGCTCCAGGTTGAGACTTGAGTATGAGTATGAGGGTAACCCTAGGAAGGATGAGGAGTTTGGTTGCGGCAGCGGTAATGATGCTAATTACCACAATTACCACCGCCGCGGCGTTGGGGATTTGCCACCCAGACACGACTTGCCCAACGGAGGCTTCGGCAGGGCGCCACCGGCGATGTCAAGGGAGATTAATATTGATTTGAAACCCGGGGGGTATGTTCGCGGGTATAGTGTGGAATTCGAGGATAAGATTCCCAGGGTTGGAAGAAGAGATGGGCATGGCGAAGGCAAGAGGTGGTTGAATGAGAGGAGGGGACCTAAGGAGTTGCCTGATTCACGGTTCGAATTGGGGACCGGCGAGATTGGTTTTGCTAAGAATGTTGATGATGATTTTCGCGTTGGGACGCGTGAGGAATATGGATGGGAATCGGGTAGATATAGTGGCAGAGGGAACAACAGGGAGTTTGGTCATGAATTATGGCGACCTTCTCTAAAGAAACAGGTTCAAAAGAAGAGTGCTCTTCTTAGGATCCAGAATGCAAAACCAAGTTATAGGAATCGTGAGATTGAACAATTACGGAATGCTGGTTATTCTGCTGAGTCTAACACTAATGATTTCAGGGGCAAGGAGCAGTGTGGGCATGTAGGTCATGGGATGAAACAAGAAGAAAGGGAAGGAAGTCCTGTGGAGCTTGATATCTCTTTTGAATCAAATTCCCTGGTTGCGAAGGCTATTGTGACCGCTTCGACTTCGACTGTTGTTAATGATACAAATATGAATTCTGTCTCTGATGCTGATTTAACTCCCTCAGAAAAGAGAAAAAAGGTTTCAGTATCCGATAGTGATTGTTCTGGTTTGGAAGCTGCAAAAGTATCTAGGGATGTTGTAACTTTGAATAGCTCATCATGCAAAGTGAATGACTGCTCTGGATCTGTGAATGATTTAAGCTTACAGAATAATGTTGTTAATCCTTGTTCTCAACCTTGCACCCGTGAGACTGATAGTGTGAAAAATGAGGTTGCAGGTGGAAGTACCAAAATTCACTCTGGTAAGTCCTCCCCAAGGGTTGTCAAGAAGAAAAAAGTTGTCAAGAGAGTAGTGAAGAAAGTTGTTGGAAATCCAAAATCTACAATGTCAAATTCACGATCAGTGAATAAGGTTCATGGATGTGTGCAACCTGATCGAGTCATACCTAGTTCTTCATCTGTCTCTGTTCCCAACAAAGTTGAACCTTGTCTGGAGCAGAAAAACATCACTGTAGACAAGATGTCAATGCCTGGCCATAGTTCATACAATTTATCAAAGGATCGGAATCAATTGCTTGAAGATAGAAATGGAGATCTAACCCTGCTGAGTTTGGGGCCACATTCCAGGTCACGAGAATGTGAAACTGATGAAGATTCAGATACTCAGAAAGGAGCCGCCAGGTTTGAAAGTGGCCTTAACATTCCAAATTCTCAATCTTGTGCTTCTACTGGTGAAGCTAAAAAGATTGATTCTGAGTGTTTAGATGCAAATAATTCTGTCCATGACTTGCGTAGAATGCCAGATACTAACATGGTTCCTGAATTATTAAATGGAAGTACTTCCAAAATCAATGATGTGGGTTGTGATATTAAACAGCTATGTCAGAATCAAGAGTCTCAATCATGTGAGAATTATTCAAATGTAAGATGTCCACAGAATGGGTTTGTTATAGATGTAGTAGATGACAGCGTTCTTAGTTCAGCTGACAATATTGGTAACTCAGATCGCACTAATACATATAACTCTGCTAGTAGCGTTTATGGCCTAATTTCTGGTGATCTTAAAGGATCTAAAGAGAAGCTTACAGTTACTGAATGTGGTCTTACTGGTGAATCTGGTTTTGGACTTATGGTCCCTACTATTATCACCAAGTATGCTATTTTGGAAGAAAATCCAGACGTGATCAACCCTGCATCAAGCAGCGCAATGTCTGCCCCTTCAAATTCAGGAAAAATTAAGATTCACTCTGGTACAGATTGCATACAAAATGCTATTGCTCTGACACAGGGTTCTTATAGTGGACCGGTCAATTTAGATGATGGTACCTCTGTTCAGTGTTCTGACATCACTAATGATGCTGTGAAGGATGTTTCCCCCTGTTACGCTGCCATATCTTCTGAGAATTGTTGCACGGAAGAGCCATTTTCAAGTTCTAATCTTTCTGTTGGATTTGGTGAAGGGGATACAAACAATATGAAAAAGAGAAAAGCTAGGACTCATTCAAAGTTTTTGCACTCAAAGATGGAGGGAATTTCTCCAAAACCTGTAAATTCAGTTAGCCATGCAAATGATTGGGATACTGCCTCAAGTGTGAAGGTGAAGGATGCATGTTGTTCAGAAGTTTTGGATCAATCTGTTCAAAGCTTAGATTCTAACCTGGAATCGTGCTTGAATGGGATCATTACTTTACATGGGAAAAAGGAGCTTTCAGAGGCTGAGCTTTGTGTTAGAGATAATGAGATTGATGATGCAAATTATCTTTCACTATTATCTAAAGGGATCAAAGTCACGACTACCTCTGAGTTGAGTGATGCAGTTGTGGTATCCAAATCTTGTGCGGATTTTCCTGTTTCTTTCAGTGATAAACAAGCGCCCGAAAAAGAAGTTGAATTGTCAAGCATGGATGTTCTGTTTAGTGCACAATCATTGTCATGTTCAGAGGATAGTAGGAAATTGTCTGACAATTTTGTTGGAGGTTCTTGTGACGCTAGATATGCAAATAATGAAACCATGAGTTCTGACCATTTTGAATTAAAGAACTCAGATTTTGCATCTTATTCACTTCGTGAGGACTTGGACATTCAGTTCCCATTGTTGGATGGTGAATGCAAAGAAAATGGCACTCAAATGCAAACTGACATTTTTACGTCTGGATTTAATAAGGGAGATATGAAGGACAGTTTAATTCATCAACAGAGCATTGTGTCCCATCCTTCCGATGGTGATTTGGAGGAGGATGCACCTGAAGCACCATCAGATGTGTGTTCTCAAGGGATATCGGAAGCACCTGAGAGAGGGAATTTAAATTGTACATCAATCCAAGATGAAAACAATTGTGGGGATATATCTGCAGTTGAACATGGTTCTGATTTGCCTACTTGTACTTCACCAATACAGCATACTAATAAGATTATGAAGTCAGCTAATGCAACTGGGCATAGTAACCCAGTTGAGAGGAATCTAATGCGACAATCATCCCAAGTCAACTCCAAGGTTTCAAATAATGGTCCAGTTTCTTATTTTTCAGAAAATGGGAGCAAAAATACCCTTGGAGGTGCCATGCCAAAAACTCAAAAGGGTCGTTCGTTCATCATTTCAAAGTCAAATTCAAAGACATCTGCCTCTTCAACCCATCTCTCAAATCCTCGAACTTGGCGACGTTCTGGTAATAATTCTCAAGGTTCTTTACCTGGAAACAAGCTTTCGCCAGGAAAATTTCTTCCCAAAAGGCAAATTCTAGATAGGAAAGGAAACTTTCAGAATACCTCTTACATTCGTAAAGGTAACAGTCTTGTAAGACAGCCTACTACAGTTTCTTTTACTCAGATCTCTTCTGTAAATAAGTCACCTTTGAGCTTAGATGAATTATCAAAGAGTACCAGATCTGGGAGCAGGATTGATGTGTCAGATCAACTGACCTTGAAAACAGGAGTAGCAGAGGTCCCTCAGCAGAGTCAGAGAAAACCTTCACTATCCATTGGCACATTATCAGAGGAAAATATATCTTCCCCATTGGTAGAACCTCCTTCCAGTGGTTGCTATGAAAATGCATCAGATCCTAGAAAACTGATAGATATCAATGATACACCAAACTCTTCCAAAGATGATTCAAATCAGTATGAAACTCCTGATAATCAAAGTAGTCCACTGAGTAAGCTGGAGAACCAAGTTGAAGCAAATGATGGACACATTTCTTCTTTCAGCACCAGGAGAATTGTATATACAAAGCCCAAAACAAATCAGTTGGTAGCGACTTCAAATTCTCGTGATGAGAAGTCCCAAACAGCCTTCTCTGAAGGCTACTACAAGAGGTGCAAAAATCAGTTAGTTAGGAATATGAACCAGACTGTTGCAGTGCCGAAAGCCACTCTAGATTCTGATGGTCAGGGGTCTTGTAAGGTGCTTTGCAACAGAAAGCTTAGTAAGAGGCAGTTACATAAAGTTGCTGGGAGGTCATTCAAATCTTTAAGAGCCTCATTAGTCTGGACATTATGTGGCAAAAAGTCACCTAAAAATGGCCATAATTCATGGCATTCTCAAAGGGTTTTGCCTCAGTTATTTCCATGGAAAAGACCAACATATTTAAGAAGCGTCATTCATAATTCTGCTTCATGTTCCAATAGTACCTTCTTATCAGCAGTTAGAAAGATGGATACTGTTTACACTAGGTCAACCCGTGGGTTTTCTCTTTGGAAATCCAAGGTATTAAGTGTTGGTGGGTCTAGTTTAAAATGGTCCAAATCCATTGAGAAGAACTCAAAGCAAGCTAATGAGGAGGCCACACTTGCTGTTGCTGCAGTAGAGAGGAAAAAGAGAGAGCAAAAAGAACGTATATTCCGTATTGGTTCAGTTCGCTACAAAATGGATCCTTCCAGGCGCACACTTCAGAGGATTTCAGGTGATGATGAATCCCTGTTGTCTGCCACTACTGATTCGGGCTTGGTTGTGAAAAGAGCTTACATTCCTAGGAGATTGGTGATTGGAAATGATGAATATGTCCGAATTGGAAATGGTAATCAGCTTATCAGAGACCCAAAAAAACGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCATACTGCCAGGCAACGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTTACTAGATTTGGGAAATGTAACAAGGAGGGTGGGAAATGCCCTTATGTTCATGATCCCTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTGACTCATAAGGTTATACCAGAGAGAATGCCAGATTGTTCTTATTTTCTGCAAGGCTTATGCACAAACCGAAATTGCCCATATAGACATGTCAATGTGAACCCTAAGGCTTCTGTTTGTGAAGGATTTCTCAAGGGTTATTGTGCTGATGGGAATGAGTGTAGGAAGAAGCACAGCTATATCTGTCCTACTTTTGAAGCAACGGGCACCTGTACGAAAGGAACCAGATGCAAGCTTCATCATCCCGAAAAACAAAAGGGAAAGAAAAGGAAGAGATCTGGAGATCAGAGTAATAGTAACAGCAGAGGGCGTTACTTTGCTTCTGTTCCGATTGATGTTTCTGAAGCTGGAATCGTAGTTATTCCAGGGCAACGTGATCAGAGTGATGATCTTGAAGGAGAACTTACTGACTACATCAGCCTTCAGGATGACTATACAAAAACTGTTGGTCAATCATTAGCGCTAACATTGTGCGACAGCGATTCCTTGAACTTGCAGTTGGAAGATTATGAAGTAAATATCAAACCAACTCTTTTAATGAAAACAAAAGGCACGCCGCGATCTTCTTGGTCCAGTGTCCTGCAAATAACCTCTGGAGAACAGACAAATAAAATTTACTCTACCGGGAGTATTTATGCAATTCCTGTGCTCCCCCCAAAGACTATTACCGCCCTTTTGACATCATTGATACACATCGATTGTCTGTCTTGGAATTGGAATATAGGGCGACGTTACACGGGTGCTCAATCAAATGATATTGAGCATGTTTTCCATTTCTTTTTGAGAAACAAGCGGGCTATTTTTTTTGCAAAATGGTGCTCAATTTCACGTGGCAACTCTGCCAAGATCTCTTCGTTAGTATGGAATGTATCATCAAATAGTCAATATGATTTCACGAGATCTAGTTTCATTCAAACGGATTTTAGCCAATTGAAAGGATCTTTTGATCAATCCAGAAATTTCATTAGAAACGAGGGTTTGGAATATCATACATTGACCAATCAAAGAGATACAACTAAAAGAAAGATTGATTCTTTGTTTGGATTCTTCCTTTCTTCAAACGGAACGAACATAAATAGAATCAAAGCGATTCTCTAA 6402 0.4127 MPPITTTRHPIKTNSPNSIPLTTLIVPSKKNTQSPTTTISHFPNPPGLPAESSRAILSPAAIFLVSTLKHAGTLTLAVGSLPTVSFRGIIPPLILTIRYDPDRSRLRLEYEYEGNPRKDEEFGCGSGNDANYHNYHRRGVGDLPPRHDLPNGGFGRAPPAMSREINIDLKPGGYVRGYSVEFEDKIPRVGRRDGHGEGKRWLNERRGPKELPDSRFELGTGEIGFAKNVDDDFRVGTREEYGWESGRYSGRGNNREFGHELWRPSLKKQVQKKSALLRIQNAKPSYRNREIEQLRNAGYSAESNTNDFRGKEQCGHVGHGMKQEEREGSPVELDISFESNSLVAKAIVTASTSTVVNDTNMNSVSDADLTPSEKRKKVSVSDSDCSGLEAAKVSRDVVTLNSSSCKVNDCSGSVNDLSLQNNVVNPCSQPCTRETDSVKNEVAGGSTKIHSGKSSPRVVKKKKVVKRVVKKVVGNPKSTMSNSRSVNKVHGCVQPDRVIPSSSSVSVPNKVEPCLEQKNITVDKMSMPGHSSYNLSKDRNQLLEDRNGDLTLLSLGPHSRSRECETDEDSDTQKGAARFESGLNIPNSQSCASTGEAKKIDSECLDANNSVHDLRRMPDTNMVPELLNGSTSKINDVGCDIKQLCQNQESQSCENYSNVRCPQNGFVIDVVDDSVLSSADNIGNSDRTNTYNSASSVYGLISGDLKGSKEKLTVTECGLTGESGFGLMVPTIITKYAILEENPDVINPASSSAMSAPSNSGKIKIHSGTDCIQNAIALTQGSYSGPVNLDDGTSVQCSDITNDAVKDVSPCYAAISSENCCTEEPFSSSNLSVGFGEGDTNNMKKRKARTHSKFLHSKMEGISPKPVNSVSHANDWDTASSVKVKDACCSEVLDQSVQSLDSNLESCLNGIITLHGKKELSEAELCVRDNEIDDANYLSLLSKGIKVTTTSELSDAVVVSKSCADFPVSFSDKQAPEKEVELSSMDVLFSAQSLSCSEDSRKLSDNFVGGSCDARYANNETMSSDHFELKNSDFASYSLREDLDIQFPLLDGECKENGTQMQTDIFTSGFNKGDMKDSLIHQQSIVSHPSDGDLEEDAPEAPSDVCSQGISEAPERGNLNCTSIQDENNCGDISAVEHGSDLPTCTSPIQHTNKIMKSANATGHSNPVERNLMRQSSQVNSKVSNNGPVSYFSENGSKNTLGGAMPKTQKGRSFIISKSNSKTSASSTHLSNPRTWRRSGNNSQGSLPGNKLSPGKFLPKRQILDRKGNFQNTSYIRKGNSLVRQPTTVSFTQISSVNKSPLSLDELSKSTRSGSRIDVSDQLTLKTGVAEVPQQSQRKPSLSIGTLSEENISSPLVEPPSSGCYENASDPRKLIDINDTPNSSKDDSNQYETPDNQSSPLSKLENQVEANDGHISSFSTRRIVYTKPKTNQLVATSNSRDEKSQTAFSEGYYKRCKNQLVRNMNQTVAVPKATLDSDGQGSCKVLCNRKLSKRQLHKVAGRSFKSLRASLVWTLCGKKSPKNGHNSWHSQRVLPQLFPWKRPTYLRSVIHNSASCSNSTFLSAVRKMDTVYTRSTRGFSLWKSKVLSVGGSSLKWSKSIEKNSKQANEEATLAVAAVERKKREQKERIFRIGSVRYKMDPSRRTLQRISGDDESLLSATTDSGLVVKRAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKEGGKCPYVHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCTNRNCPYRHVNVNPKASVCEGFLKGYCADGNECRKKHSYICPTFEATGTCTKGTRCKLHHPEKQKGKKRKRSGDQSNSNSRGRYFASVPIDVSEAGIVVIPGQRDQSDDLEGELTDYISLQDDYTKTVGQSLALTLCDSDSLNLQLEDYEVNIKPTLLMKTKGTPRSSWSSVLQITSGEQTNKIYSTGSIYAIPVLPPKTITALLTSLIHIDCLSWNWNIGRRYTGAQSNDIEHVFHFFLRNKRAIFFAKWCSISRGNSAKISSLVWNVSSNSQYDFTRSSFIQTDFSQLKGSFDQSRNFIRNEGLEYHTLTNQRDTTKRKIDSLFGFFLSSNGTNINRIKAIL* 2134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1929 2133 Gene3D - 1802 1865 - -
Amo17g1929 2133 MobiDBLite consensus disorder prediction 1850 1871 - -
Amo17g1929 2133 MobiDBLite consensus disorder prediction 1330 1360 - -
Amo17g1929 2133 MobiDBLite consensus disorder prediction 1217 1250 - -
Amo17g1929 2133 Gene3D - 1747 1801 - -
Amo17g1929 2133 ProSiteProfiles Zinc finger C3H1-type profile. 1720 1749 IPR000571 GO:0046872
Amo17g1929 2133 MobiDBLite consensus disorder prediction 1217 1258 - -
Amo17g1929 2133 MobiDBLite consensus disorder prediction 1330 1403 - -
Amo17g1929 2133 MobiDBLite consensus disorder prediction 551 573 - -
Amo17g1929 2133 Coils Coil 1608 1628 - -
Amo17g1929 2133 MobiDBLite consensus disorder prediction 1376 1403 - -
Amo17g1929 2133 ProSiteProfiles Zinc finger C3H1-type profile. 1824 1852 IPR000571 GO:0046872
Amo17g1929 2133 PANTHER CCCH ZINGC FINGER 321 1950 - -
Amo17g1929 2133 Pfam Plant protein of unknown function (DUF825) 2047 2115 IPR008543 -
Amo17g1929 2133 ProSiteProfiles Zinc finger C3H1-type profile. 1775 1801 IPR000571 GO:0046872
Amo17g1929 2133 SMART c3hfinal6 1829 1851 IPR000571 GO:0046872
Amo17g1929 2133 SMART c3hfinal6 1720 1748 IPR000571 GO:0046872
Amo17g1929 2133 SMART c3hfinal6 1802 1828 IPR000571 GO:0046872
Amo17g1929 2133 SMART c3hfinal6 1775 1800 IPR000571 GO:0046872
Amo17g1929 2133 SMART c3hfinal6 1749 1773 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1929 Amo-Chr17 97379511 97389291 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo17g1929 DUF825 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1929 - - ahf:112706494 3625.48