Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1907 ATGGGTGAGGTAGTTGTGAGCGAGAGATTAGTTGGAACGGTTGAGGAAGAAGAGAAGCAGACGACTACGGTGGCGGCTGCCGAGGAAGAAACTACTGCAACGGAGGGCAAAGGCGGAGGAGGAGAATCGAAAGGGCTGATGAGGTGGGAGAAGTTCTTGCCGAAGATGGTACTGAGGGTGCTCTTGGTTGAAGCTGATGATTCCACGAGGCAGATTATAGCTGCGCTCCTCAGAAAATGCAGCTACAAAGTGGCGGCTGTTCCTGATGGCCTAAAGGCATGGGAAATACTCAAGGGAAGACCCCACAATATCGATCTAATACTGACGGAAGTGGATTTACCTGCCATATCTGGCTATGCACTTCTCACTTTAATTATGGAACATGATATTTGCAAAAATATCCCTGTCATAATGATGTCCTCACAAGATTCTATAAGTACAGTATACAAGTGTATGCTGAGGGGAGCTGCTGATTATCTTGTTAAGCCCCTTAGAAAAAATGAATTGAGGAATTTGTGGCAGCATGTTTGGAGAAGGCAATCGTCAACTGTTGCCATGAATGGCCTCCAAGATGACAGTGTTGCACAGCAGAAGGTTGAAGCCACTGCTGAAAACAATGATGCTAGTATTCGTTCAAGTGGTGATGCTGCTTCCATTCAGAGAAATAAGGAATTAATCGAGAAAGGAAGTGATGCACAGAGCTCTTGCACAAAGCCCGACCTGGAAGCTGAGAGTGGCCCTGTCGATAACATGCAGGAATTTGCTTCACTGAAATGTGGTGAATCATATCCAACTGGAACAATGACACAAGAGGTAGAAACGTGCATGCGTTTGGGGCAGATATCAGTTATGCATGACAGTCATGCTGGAGGATTAGCTATGGCTAGTAGCAAAAATTGTGAGACAAGCACAACGAATGGCAAGGATGGCGATACAGAACATTTTCGGAGTGCTACTATCTGTGGTGAGGCTCATGACAATCACTGTGTTCAAATTAGCTGTTCTAAGGAAGCTATTGACTTGATTGGAGCATTTCATAATCGTCCAAACTGCAGCCTCAAAACTCCCACAGTTAACTGCACAGGAAAGTTTGACTTCATTCCGCAGTTGGATCTTTCCCTAAGAAGACCTCATCCCAGCAACTGTGACAATGAACTCGCTGAAGAAAGAAATACCATCATGCATTCAAATGCCTCAGCTTTCAAGCGGTATACAAACAAGCAATTTCAAGCCTCACCTGCGATTTTAAACTTCTCTGACCAACAAAGGGAACAGAGAACAAATTGCGAGAAAAGTATTTCCCATTTTGCTACTGGCTGTAATTCAGATAGTTCAACACCTAGTGTGCAAAGAAATCTTTTATCTCCAACTACACCCCAATCGAAAGAATCTGAAGCAGCAACTTCACACTCGCAACAGCAAGGGCACTCTCTCCCGATTGCAGTTAAAGGTGTAAGGTTCAATGATTTGTGCACGGCCTATGGTTCTGTACTTCCTCCAATGTTTCGCACGCAATCGGGTCCACCATTGGTGCCTAGCCCCAGTTCAGTTGTGCTTCTTGAACCAGCCTTTCAAGTAAATGCATTTTATCAATCAAGTGTTAAAGACAATAGTTCAGAGCAGGTTTATGAATCTCCCAGTTCTGGTGGAAAAAGTGCTCCAAACAACATGATTTCCAGACCGGAACACAAACCAGAACATGCTGAGGATCGAAGACACATCTCTCCTGCAACTGATCAAAGTGGATCCGGTAGCTTCTGTAATGGAAATGCAAGCCATCTTAATAGCATGGGGTATGGAAGCAACTGTGGAAGCAGCAACATTGTTGATCAGGTCCCAATTGGCAGAGCAGCTTCAGAGGGTAAGAATGAAGAGATGGCAAACAATGCAAGCTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAATAAGTTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGCCCGAGAGTGAAAGGTCAATTTGTTCGTCAAGTGCAGCCGGATGCTCTTGCTGCAGAGAAAGATGGCAAAGAATATGATCTTTAA 2094 0.446 MGEVVVSERLVGTVEEEEKQTTTVAAAEEETTATEGKGGGGESKGLMRWEKFLPKMVLRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWEILKGRPHNIDLILTEVDLPAISGYALLTLIMEHDICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPLRKNELRNLWQHVWRRQSSTVAMNGLQDDSVAQQKVEATAENNDASIRSSGDAASIQRNKELIEKGSDAQSSCTKPDLEAESGPVDNMQEFASLKCGESYPTGTMTQEVETCMRLGQISVMHDSHAGGLAMASSKNCETSTTNGKDGDTEHFRSATICGEAHDNHCVQISCSKEAIDLIGAFHNRPNCSLKTPTVNCTGKFDFIPQLDLSLRRPHPSNCDNELAEERNTIMHSNASAFKRYTNKQFQASPAILNFSDQQREQRTNCEKSISHFATGCNSDSSTPSVQRNLLSPTTPQSKESEAATSHSQQQGHSLPIAVKGVRFNDLCTAYGSVLPPMFRTQSGPPLVPSPSSVVLLEPAFQVNAFYQSSVKDNSSEQVYESPSSGGKSAPNNMISRPEHKPEHAEDRRHISPATDQSGSGSFCNGNASHLNSMGYGSNCGSSNIVDQVPIGRAASEGKNEEMANNASSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVQPDALAAEKDGKEYDL* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1907 697 MobiDBLite consensus disorder prediction 440 477 - -
Amo17g1907 697 MobiDBLite consensus disorder prediction 535 586 - -
Amo17g1907 697 Pfam CCT motif 638 680 IPR010402 GO:0005515
Amo17g1907 697 CDD psREC_PRR 60 163 - -
Amo17g1907 697 Gene3D - 56 274 - -
Amo17g1907 697 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 16 671 - -
Amo17g1907 697 MobiDBLite consensus disorder prediction 560 576 - -
Amo17g1907 697 SUPERFAMILY CheY-like 58 185 IPR011006 -
Amo17g1907 697 ProSiteProfiles Response regulatory domain profile. 59 177 IPR001789 GO:0000160
Amo17g1907 697 SMART REC_2 58 173 IPR001789 GO:0000160
Amo17g1907 697 MobiDBLite consensus disorder prediction 535 555 - -
Amo17g1907 697 Pfam Response regulator receiver domain 60 171 IPR001789 GO:0000160
Amo17g1907 697 MobiDBLite consensus disorder prediction 17 43 - -
Amo17g1907 697 ProSiteProfiles CCT domain profile. 638 680 IPR010402 GO:0005515
Amo17g1907 697 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 671 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1907 Amo-Chr17 94733132 94745266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1907 337 498 Response Regulator Gene Family AT5G24470 28.824 4.99e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Amo17g1907 Response_reg 6.9e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1907 K12130 - gmx:100777119 992.645