Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1899 ATGGGAAGAGGCAGAGGAGTTGCGGCTCTGAAACCCACGGCGGCGGTTACGGCGGCGGAGGTAAACGGATCAGAGTCAATGCCAAGACCGTGGGGAAGATTCGCCGCCGAAATCAGAGACCCGTTGAAGAAAGCAAGGGTTTGGCTCGGAACCTTCGATTCCGCCGAGGACGCCGCAAGCGCTTACGACGCCGCCGCAAGAACACTCCTGGGACCAAAAGCCAAGACCAATTTTTCTCGCCTCTCAGGATCCAGCCCTCAATGTAGAACTGCAGCTTCGCCAGCACCACTTGCTGCGATGGGAGATTCAACCCCTTCGCTACTGCTCTGCCGCCCTGGATGGCAACTTGCTCCTCGGCCAGAGCCATTTCCTCCATGTTACATACAAGTAATACACAATAAGGTACAATTAGAACAAGTAGCACATAATCAGGTAACATAG 441 0.5442 MGRGRGVAALKPTAAVTAAEVNGSESMPRPWGRFAAEIRDPLKKARVWLGTFDSAEDAASAYDAAARTLLGPKAKTNFSRLSGSSPQCRTAASPAPLAAMGDSTPSLLLCRPGWQLAPRPEPFPPCYIQVIHNKVQLEQVAHNQVT* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1899 146 Pfam AP2 domain 29 71 IPR001471 GO:0003700|GO:0006355
Amo17g1899 146 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 29 84 - -
Amo17g1899 146 SMART rav1_2 28 85 IPR001471 GO:0003700|GO:0006355
Amo17g1899 146 CDD AP2 28 78 IPR001471 GO:0003700|GO:0006355
Amo17g1899 146 ProSiteProfiles AP2/ERF domain profile. 20 79 IPR001471 GO:0003700|GO:0006355
Amo17g1899 146 SUPERFAMILY DNA-binding domain 28 79 IPR016177 GO:0003677
Amo17g1899 146 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 29 84 - -
Amo17g1899 146 Gene3D AP2/ERF domain 25 80 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1899 Amo-Chr17 93616145 93618294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1899 1 78 AP2-EREBP Transcription Factor Family AT3G20310 64.706 4.31e-27 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo17g1899 AP2 2.7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1899 K09286 - qsu:112007198 96.6709