Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1894 AACGAGCTTCTTCCTCTCTCCTTCCACGAGCTTCTTCTTCCGCCGTTGCCGCCGCCGCTTGCGTCGCGTCTCCTCATCGCACGAGTTTCAATCACCGCTACCCCTTCGCTTCATACACCTCCGCCAATTTCGCTCCCAGAGCCTCCCCCTCGTCCCCACGCGCTTCTCCTCCTCCTTTGGCCACCATCGGCGTTTTTCTTCCACCTCTTCGCCACTGTGTCCAACATCGTCATCCGTGAGATTCTCCTCGGAGCAACCACCAGGCTCCCCCGGGCAACACTCCACGGCTATAAAGAGGCCCATTTGATATGTGAAATGTATACAATGTTTCTTGTTTGTTTTTTTTTTTCAATAGGTCTTGTTCCTGAAATACCTGAAGATCTATACCACTTGATCAAGAAGGTTGTCTCAATCAGGAAGCACTTGGAGAGAAATAGGAAGGACAAGGACTCCAAATTCAGGTTGATTTTGGTAGAGAGCAGGATCCACCACCTTTCACGTTACTACAAGAAAACCAAGAAGCTTCCACCCATATGGAAATAG 543 0.4991 NELLPLSFHELLLPPLPPPLASRLLIARVSITATPSLHTPPPISLPEPPPRPHALLLLLWPPSAFFFHLFATVSNIVIREILLGATTRLPRATLHGYKEAHLICEMYTMFLVCFFFSIGLVPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHHLSRYYKKTKKLPPIWK* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1894 180 ProSitePatterns Ribosomal protein S15 signature. 138 168 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo17g1894 180 CDD Ribosomal_S15p_S13e 122 180 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo17g1894 180 Gene3D - 122 180 - -
Amo17g1894 180 SMART Ribosomal_S15_2 118 180 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo17g1894 180 PANTHER 40S RIBOSOMAL PROTEIN S13 117 180 - -
Amo17g1894 180 PANTHER RIBOSOMAL PROTEIN S15P/S13E 117 180 IPR023029 -
Amo17g1894 180 SUPERFAMILY S15/NS1 RNA-binding domain 119 179 IPR009068 -
Amo17g1894 180 Pfam Ribosomal protein S15 124 174 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1894 Amo-Chr17 93005799 93006612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1894 119 180 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 90.323 8.24e-36 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1894 K02953 - mnt:21408265 122.479