Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1878 ATGAAGCCCGCTACCACCAACATGGCTCAGCCGCAGAGTAATTGGGAGGCTGATAAAATGCTTGATGTTTACATCCATGATTATTTTGTAAAGAGAAAATTACATAACACTGCAAAAGCTTTTATGACAGAAGGCAAAGTTTCCACCGATCCTGTAGCAATTGACGCTCCTGGAGGATTTCTGTACGAGTGGTGGTCTGTCTTTTGGGATGTCTTCATCTCAAGGACAAACGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAAATGAAGGCTAGAGAACAACAACTTCAGATGCAACAATTGCAACTTATGCAGCAGCGCGGTGCACAGCTGCAACGCCGGGATCCTAATCATCCTCCTCTAGGTGGTTCCTTAAGTGCCATGAACTCTGAAGGAATGTTGGGGCAGCAACCAACAAATGTGTTGGCCATTAAAATGTATGAAGACCGAATGAAACACTCTCATTCAATGGAGTCAGAGGCATCTCCAACACTTATCGATGCAAATAGGATGGCCCTTCTTAAGTCTGGAACAAGTCATCAAGGTCAGTTGGTCCATGGTAATTCAGGAAATATGTCTACTGCATTGCAGCAACTTCAGGCCCGGACTCCTTTGACAACTGACATCAAAGGAGAAGTCAATTTAGGTGCCACTCCCAAGAGTTTGCCTATGGATAACTCCGTGTACAGACAAGCAATTTTACAATCAAAATCCGGGCTAGGCGGCACAGGGTTAAATCCAGGGGTTACAAGTCTTCCACTAAAGGGGTGGCCCTTAACTGGTATTGATCAACTAAGACCTGGCGGTTTGGGCGTACAAGTTCAGAAGCCTAATTTGACAACTCAAAGCCAATTTCTTTTGGCATCACAACAGCAGCAAGTCTTAGCACAGTCTCAGGCACAAAACAACCTTGGAAGTTCTAATAGTCAAGGTGATATGGATCCACATAGACTTTCTACGGTCCCTCGAGGTGGCTTAAGTGCAAAAGATGGTCAATCTACCAGCTCCCAAGTGCAGTCAGGTTCACCTAAGCAGGTGAAGATGTCCCAGGCACAACATTCACTATCTCAACAGGATCATTTGCAGCAGCAGCAACTGCAGCAGAACAACCGGAAAAGGAAACAACATTCTTCTTCTGGACCTGGCAATAGCACTGGTACTGGAAACACAGTAGGTCCTTCACCTAATTCACCACCATCAACTCACACACCTGGTGATGGAATAAATACAGCAAGCAGCATGCAGCATGTTAACAGTATGCCAAAGAGTATGATGATGTATGGTACAGAAGCAACAGGTGGCCTTGCATCGTCTTCTAATTTGCTTGAGGATATGGACCGATTTGGAGATGTTGGTACTTTAGAGGATAATGTGGAATCCTTTCTATCAAATGATGGAGGAGATGAAGGTAGTCTCTATGGAAGTATAAAACAAAATCCGGCTGAGCAACAAAAGGAATCATCAAAAGGTTTCACCTTTGCTGAATTTGGTTGCATACGAACAAGGAACAGCAAAGTTACTTGCTGTCATTTTTCATCTGATGGAAAATTACTTGCCAGTGCTGGACATGACAACAAGGTTGTCCTTTGGAACATGGACACTTTACAGACAGAGAGCACTCCAGAAGAACACAAGTTGGTTATTTCAGATGTCCGTTTTAGACCAAATTCATCTCAGTTGGCGACAGCCTCAATCGATAAATCTGTGCGGTTATGGGATGCAGCCAATCCAAGCTATTGTGTGCAAGAATACGGTGGGCACAGTGCAGCAATTATGTCTCTTGATTTCCACCCAAAGAAGACTGATATGTTCTGCTTTTGTGATAGTGAAAATGCAATTCGGTACTATGATATTACTTCATCCTCCTGCACGCATGTATTGAAGGGTGGAAATGCTCAAGTGCGGTTTCAGCCTAGAGTGGGGCAAGTACTAGCAGCAGCTTCTGACAAAGTAGTGTCAATTTTTGATGTTGAAACCGACAGACAAATTTATTCACTTCAGGGACACTCTGAAGCGGTGAACTATATTTGCTGGGATGCAACTGGAGATTTCTTGGCAACTGTGAGTCAAAATTTGGTGAAGATTTGGACACTGGCCTCTGGAGAATGCATTCAGGAGCTTAGCTCAAATGCAAACCAGTTCCATTCTTGTGTCTTTCATCCAAGCTATTCAACTTTGTTGGTGATTGGAGGGTTTTCGTCCTTGGAGCTGTGGAACATGGCTGAGAACAAAAGCATGACAATTTCTGCACACGAGAATATAATTTCCGCTTTGGCTCAATCTCCTGTAACTGGAATGGTCGCCTCTGCAAGTCATGACTGCTCTGTTAAGTTATGGAAATAA 2355 0.4395 MKPATTNMAQPQSNWEADKMLDVYIHDYFVKRKLHNTAKAFMTEGKVSTDPVAIDAPGGFLYEWWSVFWDVFISRTNEKHSEAAAAYIETQQMKAREQQLQMQQLQLMQQRGAQLQRRDPNHPPLGGSLSAMNSEGMLGQQPTNVLAIKMYEDRMKHSHSMESEASPTLIDANRMALLKSGTSHQGQLVHGNSGNMSTALQQLQARTPLTTDIKGEVNLGATPKSLPMDNSVYRQAILQSKSGLGGTGLNPGVTSLPLKGWPLTGIDQLRPGGLGVQVQKPNLTTQSQFLLASQQQQVLAQSQAQNNLGSSNSQGDMDPHRLSTVPRGGLSAKDGQSTSSQVQSGSPKQVKMSQAQHSLSQQDHLQQQQLQQNNRKRKQHSSSGPGNSTGTGNTVGPSPNSPPSTHTPGDGINTASSMQHVNSMPKSMMMYGTEATGGLASSSNLLEDMDRFGDVGTLEDNVESFLSNDGGDEGSLYGSIKQNPAEQQKESSKGFTFAEFGCIRTRNSKVTCCHFSSDGKLLASAGHDNKVVLWNMDTLQTESTPEEHKLVISDVRFRPNSSQLATASIDKSVRLWDAANPSYCVQEYGGHSAAIMSLDFHPKKTDMFCFCDSENAIRYYDITSSSCTHVLKGGNAQVRFQPRVGQVLAAASDKVVSIFDVETDRQIYSLQGHSEAVNYICWDATGDFLATVSQNLVKIWTLASGECIQELSSNANQFHSCVFHPSYSTLLVIGGFSSLELWNMAENKSMTISAHENIISALAQSPVTGMVASASHDCSVKLWK* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1878 784 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Amo17g1878 784 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Amo17g1878 784 PRINTS G protein beta WD-40 repeat signature 771 784 IPR020472 -
Amo17g1878 784 Pfam LisH 19 45 IPR006594 GO:0005515
Amo17g1878 784 MobiDBLite consensus disorder prediction 330 418 - -
Amo17g1878 784 Gene3D - 637 784 IPR015943 GO:0005515
Amo17g1878 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 577 - -
Amo17g1878 784 MobiDBLite consensus disorder prediction 301 418 - -
Amo17g1878 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 577 IPR001680 GO:0005515
Amo17g1878 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 752 784 - -
Amo17g1878 784 SUPERFAMILY WD40 repeat-like 501 784 IPR036322 GO:0005515
Amo17g1878 784 Coils Coil 88 108 - -
Amo17g1878 784 Pfam WD domain, G-beta repeat 544 577 IPR001680 GO:0005515
Amo17g1878 784 Pfam WD domain, G-beta repeat 508 535 IPR001680 GO:0005515
Amo17g1878 784 Pfam WD domain, G-beta repeat 748 784 IPR001680 GO:0005515
Amo17g1878 784 Pfam WD domain, G-beta repeat 666 700 IPR001680 GO:0005515
Amo17g1878 784 ProSitePatterns Trp-Asp (WD) repeats signature. 522 536 IPR019775 -
Amo17g1878 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 503 544 IPR001680 GO:0005515
Amo17g1878 784 MobiDBLite consensus disorder prediction 301 319 - -
Amo17g1878 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 503 538 - -
Amo17g1878 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 752 784 IPR001680 GO:0005515
Amo17g1878 784 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 12 784 - -
Amo17g1878 784 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 784 IPR044716 GO:0003714
Amo17g1878 784 SMART WD40_4 663 701 IPR001680 GO:0005515
Amo17g1878 784 SMART WD40_4 745 784 IPR001680 GO:0005515
Amo17g1878 784 SMART WD40_4 496 535 IPR001680 GO:0005515
Amo17g1878 784 SMART WD40_4 624 660 IPR001680 GO:0005515
Amo17g1878 784 SMART WD40_4 704 743 IPR001680 GO:0005515
Amo17g1878 784 SMART WD40_4 581 621 IPR001680 GO:0005515
Amo17g1878 784 SMART WD40_4 538 577 IPR001680 GO:0005515
Amo17g1878 784 SMART Lish 17 49 IPR006594 GO:0005515
Amo17g1878 784 CDD WD40 507 784 - -
Amo17g1878 784 ProSiteProfiles LIS1 homology (LisH) motif profile. 17 49 IPR006594 GO:0005515
Amo17g1878 784 MobiDBLite consensus disorder prediction 466 491 - -
Amo17g1878 784 Gene3D - 481 636 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1878 Amo-Chr17 90288671 90298550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1878 521 769 U-box Gene Family AT2G33340 28.682 2.43e-16 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Amo17g1878 WD40 0.006 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1878 - - qsu:111995984 1155.58