Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1835 ATGGAAACTGGGGATGGAAATAGCAATGCCGATAGCCCTGAACGTACGGCAGGGATGGAGGGGTGCTTGTATTCCGAAGCTGTAAATAATGGAGTGGTAATTGTTGATGGAAGTGGTGCTGATGAGAGCAAAGAAATTAGGCATTCGAAGAAGGAAGCTGTAAATACCAGAGTGTCAACTGCAGATGGGGGTTTTCGGACATACAAGAGGCGCAAACATGTAAAGATGAGTTGTTCAGAAAGCAAAGCTCAGGAAGAAAGCAGAGTGTGTGCGGAAGCCGCAAGTCACTTTTCAGAACAGGCTGTGAAGAAACCATATGGTATAGCTGTAGGAAATACTTCAAAAGATAATTCAAATGGACATTGGGGGAATGTTGTACTAAATCATTTATATCATTCATTAGGCAATGATAACAGTGGCACAAAGTGGTGCATAAAGGAAGCACTWATGAGTAATCCAAAATCCATTACCGACATGGAAACTTCTAAAATTGACAAAGATGGRCAAGAATGCTCMTCACACTTCGACTGTTCCTCTCATAGGTTACAGTTTGAAGCTAATGGGCATGCATATGTCATGCATGGTGGATGTTCAAGTGAATCAGATGGCAATGGTCTTACTAAGAAGTGTCAGCGTGTGTTCCATAATATCTTAGCCTCTGAAAAATTCAGTTCATTATGTAAGGTGCTCCTAGAAAATTTTCACGGAATGAAACCTGAAAGTGTATTTGACTTTAGTGTCATAAATTCAAGGATGACAGAAGAAGCTTATGAACAATCACCCACACTTTTCTTGTCAGATTTTCAACAGGTTTGGAGAAAGCTTGAAAACACTGCAAATGAGATTGTTGCTATAGCAAAGAGTCTTTCCAACTTGTCAAGAGCGTATTACTTTGAGCATGTGGGAGTTCCTGGACACGGTTCATTTGAGGATCAAAAACAAGTGTTCCATAACTATGCATTGGACAATGTTATGAGACCACAGCAGACAGAAGTTTGTGCTACAGATAAAGTCTGCAGTTGCAGGCATTGTGGAGGCAAGGCAGATGGGACAGACTCCTTGATTTGTGATTCATGTGAGGAGATGTACCATGTATCTTGTATTGTGCCGGCTTTGAAGGAATTACCTGAAAAAAGCTGGTTCTGTGCCAATTGTACTGCTATTGAAATAAGATCTCCACATGATAATTGTGTGGTGTGTGGAAGGTTGAATGCCCCAAAGTCCTTGAACAACATTGTTGGTGATGAGAGCATTCCTACAAATGATGAAACACACAATGAATTGGAGGAAAATTCAAATTGTACATATGATGGGATCGAGGTGTCCATAGGGAGAAGAAACTTGCCTGATTGCAAAATTTGTAGGGAGGAAGTAGATGGAGAAGATGTACGGATATGCGGTCACAATTCATGCCCTAGTAAATACTATCATGTAAGGTGTTTGTCCACTAAGCAGGTCCAGTCATATGCTCACTGTTGGTACTGCCCTTCTTGTTTATGTCGAGTTTGCCTCGTRGATCGAGATGATCACAAGATTGTTCTCTGTGATGGTTGCGACCATGGATACCACATCGATTGCATGGAGCCTAAACGGACTACCATTCCAAAAGGCAACTGGTTCTGCAGAAAATGCGATGCAGGGATCCAAGCAATACGCCGGGCTAAAAAGACATATGAGAATTTCAATTTTAGAACTGGCGAAGATGTTTCAAAYCCTAAGTATAAGCTTGGRAAGAYATGGAAACAAGGACGAGAATTGGAGAAAGATGGAGGAATGGACATGCTTTTAACAGCAGCCAACACACTTAAATTTGAAGAGAACTTYGCTAGTAGCTAG 1836 0.4112 METGDGNSNADSPERTAGMEGCLYSEAVNNGVVIVDGSGADESKEIRHSKKEAVNTRVSTADGGFRTYKRRKHVKMSCSESKAQEESRVCAEAASHFSEQAVKKPYGIAVGNTSKDNSNGHWGNVVLNHLYHSLGNDNSGTKWCIKEALMSNPKSITDMETSKIDKDGQECSSHFDCSSHRLQFEANGHAYVMHGGCSSESDGNGLTKKCQRVFHNILASEKFSSLCKVLLENFHGMKPESVFDFSVINSRMTEEAYEQSPTLFLSDFQQVWRKLENTANEIVAIAKSLSNLSRAYYFEHVGVPGHGSFEDQKQVFHNYALDNVMRPQQTEVCATDKVCSCRHCGGKADGTDSLICDSCEEMYHVSCIVPALKELPEKSWFCANCTAIEIRSPHDNCVVCGRLNAPKSLNNIVGDESIPTNDETHNELEENSNCTYDGIEVSIGRRNLPDCKICREEVDGEDVRICGHNSCPSKYYHVRCLSTKQVQSYAHCWYCPSCLCRVCLVDRDDHKIVLCDGCDHGYHIDCMEPKRTTIPKGNWFCRKCDAGIQAIRRAKKTYENFNFRTGEDVSNPKYKLGKXWKQGRELEKDGGMDMLLTAANTLKFEENFASS* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1835 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 503 IPR013083 -
Amo17g1835 611 PANTHER HISTONE ACETYLTRANSFERASE 125 606 - -
Amo17g1835 611 SUPERFAMILY FYVE/PHD zinc finger 330 387 IPR011011 -
Amo17g1835 611 Pfam PHD-finger 500 545 IPR019787 -
Amo17g1835 611 Pfam PHD-finger 341 386 IPR019787 -
Amo17g1835 611 MobiDBLite consensus disorder prediction 1 20 - -
Amo17g1835 611 ProSiteProfiles Zinc finger PHD-type profile. 338 388 IPR019787 -
Amo17g1835 611 ProSiteProfiles Zinc finger PHD-type profile. 497 547 IPR019787 -
Amo17g1835 611 PANTHER D4, ISOFORM A 125 606 - -
Amo17g1835 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 567 IPR013083 -
Amo17g1835 611 ProSiteProfiles Zinc finger RING-type profile. 451 498 IPR001841 -
Amo17g1835 611 SMART PHD_3 340 386 IPR001965 -
Amo17g1835 611 SMART PHD_3 500 545 IPR001965 -
Amo17g1835 611 SMART PHD_3 450 499 IPR001965 -
Amo17g1835 611 SUPERFAMILY FYVE/PHD zinc finger 446 499 IPR011011 -
Amo17g1835 611 SUPERFAMILY FYVE/PHD zinc finger 499 553 IPR011011 -
Amo17g1835 611 Gene3D - 226 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1835 Amo-Chr17 87017908 87027892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1835 499 566 C2H2 Transcription Factor Family AT3G01460 39.706 1.07e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo17g1835 PHD 6.1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1835 - - gmx:100810450 768.074