Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1773 ATGCCTCCTCCATTTGATGTGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGACTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATCCTCCTTGATGAGCATAAACAACTCCTTAATAGGTTTATGGATCGTATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGCTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGATCTACTGAACATGACCCAAGATTATGATTTTTTATTGTGTTTATTTGGGCTAGATGTCATTGGTCTTTTAACTTCAGTGGGAGAAGAAAAAGAATATGCAAAAGAGGGAAAAATTGTGAAAATAATTGTGCTGGAATTAACTTTAAAAGATCTTACGCTGCAATGTGCATTGTTTGGAGACTATGTTAATCAAGTAAATCATTTCCTAGCCTCTGGCTATGTGGAGCAGCCTGTTGTTGTCATTCAACTTGCAAAGGTCAAGTTCTTATGGGTACATTGTCAAGTAGGTCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGCAGAGTATGATTGAGCAAGGTGTCAATGGTACCCAGCCACCGTTTATCACAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTAACTAGAAAATGCACTATTGACAAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCAGAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAATGATCATAGTAGGAAGGGTATTTTCGTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAGTCATGTACTGACTTGTTTACTGAGGTTCAAAGAGATGCAAGTATTGATACCAAGGGTGTCACAGATGATAAATTTCATCGCACTTTCCGAATTAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAACTTACCGATTATGATGCTGATGATGAGTCTAGTCCAAAAAAGGAGCCTGATTTACACAAATCTGTTCCCATTGGAAAAAGGAATATTGGTATTAAAAAGGAGTCATCAAAGACTTTTATCAAAAGTGACAAACTTGCTGGGACTGAGTTTGCTGCCTTAATTAATCATGAAAATGGAAAAGATGAGAAAACACCCGAAAATGGTACTGAGGTGTTGTTCCACATTCTCGATGCATCTTCCCAATATGGAGAGAAGCTTATCCATGAAAATCATGTTGTCACTTCTAAGGGCAAGAGGAATTTGAATCCCCAATTTGAAGAGGCGGCTACTGATGCAGATAGGTGTGGGTCCAAGATTGCCAAGGTCCTCCATTCTTCGATGCCTACTGTCTCTTTGAATGATTATTTGGAAAATTTAGTTGAAGTGTCCCAGAAACATTGGATGTTCCATCATTATAGCTTCCATCAATTGTGA 1605 0.3832 MPPPFDVISKMHPPREAWRLKVRVLRLWVVPSFGNHEVPNSMEMILLDEHKQLLNRFMDRIVEGQVYRMAYFTAVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFPFSDLLNMTQDYDFLLCLFGLDVIGLLTSVGEEKEYAKEGKIVKIIVLELTLKDLTLQCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFLWVHCQVGLQNVMYATQMLFNPDLPEVVEFRQSMIEQGVNGTQPPFITNEGKVVSLEDDFMRLTRKCTIDKLQDNNEEGSFIIFGTIRGIVEDGGWWYSACVCGNDHSRKGIFVLFDREASYLLKKSCTDLFTEVQRDASIDTKGVTDDKFHRTFRIRRICDDPTIIAMFELTDYDADDESSPKKEPDLHKSVPIGKRNIGIKKESSKTFIKSDKLAGTEFAALINHENGKDEKTPENGTEVLFHILDASSQYGEKLIHENHVVTSKGKRNLNPQFEEAATDADRCGSKIAKVLHSSMPTVSLNDYLENLVEVSQKHWMFHHYSFHQL* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1773 534 CDD RPA1_DBD_B_like 136 241 - -
Amo17g1773 534 Pfam Domain of unknown function DUF223 51 125 IPR003871 -
Amo17g1773 534 Gene3D - 105 249 IPR012340 -
Amo17g1773 534 Gene3D - 6 103 IPR012340 -
Amo17g1773 534 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 338 - -
Amo17g1773 534 SUPERFAMILY Nucleic acid-binding proteins 3 103 IPR012340 -
Amo17g1773 534 CDD RPA1_DBD_A_like 19 98 - -
Amo17g1773 534 SUPERFAMILY Nucleic acid-binding proteins 111 240 IPR012340 -
Amo17g1773 534 PANTHER REPLICATION FACTOR A 1, RFA1 20 338 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1773 Amo-Chr17 80108327 80114371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1773 2 246 Core DNA Replication Machinery Family AT5G45400 21.591 9.65e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1773 - - adu:107471135 669.848