Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1718 ATGTCAAAGTCTCCCTCTCCTGAGAAGCACCAGTCCGTTTATTCTTCTTCTGAGCCTAGGGAGTTTATTATGGCTACAGAAATAGAGGATCCCGAGTCTACTATGTCAACAGTTGCTAAGCTTGTGGAGCAACTGCATGCCAAGTTGTCATCAGCACAAGAGAAGGAACTTATCACAACACGATTGCTAGGTATTGCCAGGAGAAGAAAGGATGGCAGGGCACTTATTGGCACTCATTCTCAAGCGATGCCATTGTTCATAAACATTCTTAGAAATGGAACCTCTCTTGCGAAAGTTAATGTTGCTACTATTCTCAGTGTACTGTGCAAAGATGAAGACTTGAGGTTAAAAGTTCTTCTTGGTGGTTGTGTCCCACCATTGCTGTCAATTTTAAAATATGAATCAACTGATGCAAGAAAGGCGGCAGCTGAAGCAATATATCAAGTTTCCATTGGAGGTCTGTCAGAAGATAATGTTGGTATGAAAATTTTTGTTACAGAAGATGTAGTTCCAACGTTGTGGAATCTACTAAGTCCTAAGAACAAGCAAGACAAAATTGTTGAGGGTTTTATTACTGGAGCATTAAGAAATTTGTGTGGTGATAAGGATGGCTACTGGAATGCAACATTAGAAGCTGGAGGTATTGAAATCATTGTGGATCTCTTGTCTTCAGACAATGCTGTTTCTCAGTCAAATGCAGCTTCTCTGTTGGCTCGTCTAATGTCGGCTTTCAGTGGTAGCATCCCAAAAGTAATAGACTCTGGAGCAGTTAAAGCTTTAGTTCGACTTGTAGGGGAGGAAAACAATATTTCTGTTCGAGCTGGTGCTGCTGATGCTCTAGAGGCCCTTTCTTCAAAGTCAACCAATGCGAAGAAAGCTATTGTTGATTCTGATGGTGTTCAAATCCTTATTGGAGCCATAGTTGCTCCTTCAAAAGAATGTATGCAATCTGATGGTGGCCAGGCTCTTCAAGGGCATGCAACACGAGCTCTAGCCAATTTATGTGGTGGCATGCCTGCATTAATAATATATCTTGCAGAACTTTCCTGTTCTCCTCGTTTGACAGCTCCAGTTGGTGATATAATAGGCGCTCTTGCTTACACCCTTATGGTCTTTGAGGAAAAAGTTGATGATGATCAGGATCATTTTGATGCAACTAAGATAGAGGATACTTTAGTAACTCTTTTAAAGCCTCGAGATAACAAGCTTATTCAAGAGCGTGTCCTTGAGGCCATGGCTAGCCTATATGGTAATGTCTATCTCTCGAAGTTTCTCAATCAAGCAGATTCAAAGAAGGTTCTCGTTGGGCTTATAACTATGGCTGCCATTGATGTGCAAGGATATTTGATACGTTCACTGACAAGCTTGTGCTGTGACAGGGTAGGAATATGGGAGGCGATAAAAAAAAGAGAAGGCATTCAGTTACTTATATCTATGCTGGGATTATCTAGTGAGCAGCATCAAGAGTACTCGGTTGAACTGCTAGCAATCTTAACTGACCAAGTTGAGGACAGCAAGTGGGCAATCACTGCTGCTGGAGGGATTCCACCATTGGTGCAGTTGCTGGAGACAGGATCACAAAAAGCAAGAGAGGAAGCAGCTCATGTTCTTTGGAGTTTGTGTTGTCACAGTGAAGACATCCGTGCTTGCGTTGAAATTGCTGGGGCCATTCCAGCATTTCTGTGGCTTCTTAAGAGTGGTGGGCCAAAAGGACAAGAAGCTTCTGCTTTGGCACTGATGAAGCTTGTCAGAGTTGCTGATTCTGCAACGATAAATCAGCTATTAGCAATGCTCCTAGGAGATTCTCCAACCTCAAAGGGCCATATAATCCAAGTTTTAGGTCATGTACTTACTGTGGTTTCACAGAAAGATCTTGTGGAAAAGGGATGTGCAGCAAATAAAGGCCTAAGATGTCTTGTTCAGGTTATCAATGCATCAAATGAGGAAACCCAAGAATTTGCAACTTCAGCGATAGCTAATTTATTTACCACAAGACAAGACATTTGTGATGGTCTAGTAAATGAAGACCTTGTGCTTCCTTTAATGAAGCTTCTGACTAACAAAAATCAAGGTGTGGCCATTCAATCAGCTCGAGCATTAAGTTCTCTATCACGTCCAACCAATAGCAAAGCTGCAAATAAGTTGTCTTATATAGTACTTGAAGGAGATGTTCAGCCACTAATTAAGTTGGCTAAAACATGCTGTGTGGATGCTGCAGAAACTTCTGTTGCTGCTTCTGAATCCGCTGTTGCTGCATTGGCCAACCTTCTTTTTGATCCTTATATTGCTGCCGAGGCCCTGGCTGAAGATGTTGTTCCAGCTTTAACAAGAATTCTGGAGAAAGGAACCTTGGAAGGTAAACAAAATGCATCACGAGCTCTTCATGAATTATTGAAGCATTTTTCAGTAGGAGATCTTCTTAAGGGAGACGAACAGTGCCGTTTAACTTTGCTAGCCCTTGTTGATTCGTTAAGATCTATGCATATAGATGAGACTGAAGCTGCAGATGCTTTAGATGTGATTGCATTGCTAGCTAGGACAAAACATGATGTCAGCCTCACTTATCCTCCATTGTTGGTTCTGGCTGATAAATCTTGCTTAGAACCCCTTGTCTGCTGCCTTGCTGATGGTCCACCCATTGTGCAAGACAAGGCAATTGAAATTTTGTCCAGACTTTGTGGAGATCAGCCAGTTGTTCTTGGTGACTTGTTGTCTTCTAGTTCCAGATGCACTGGATCATTAGCTCATAGAATAATTAACTCTGCTAGTTTAGAAGTAAAAGTTGGAGCAGCTGCCTTACTAATTTGCGCTGCAAAGGATAAGAAAGAGCTCTCAATGGATTTGCTTGACACTTCTGGATATCAAAAACCATTGATTTACTCCTTAGTTGACATGATGAAGCAAAGTTCTAATTGTTCATTGTTAGAAATCGAAGTTTGCACCCCTAGAGGTTTTATGGAGAAGAATGCATTTCCAGAAGTTGATGAGTCAGAAATTCCTGATGCAGCCACAGTCTTGGGTGGTACTGTTGCCTTGTGGTTACTCTCAATTATTGCTTCTGTTCAGGTAACAAACAAATTAATAATTTTGGAAGCTGGTGGACTGGAAATTCTCTCTGAGAAACTTGCAAGACATGTCTCAAATCCACAGGCACAATATGAGGATACTGAAGAAATATGGATCAGCGCATTACTCTTGGCCATTTTATTTCAAGATACAAAGGTCATTCAATCTCCTGCAACAATGTGCACTGTACCTTCTCTGAGTCTACTTCTAACATCTGAGGAAGTAATTGACAAATATTTTGCTGCCCAAGCTATGGCAAGTCTTGTTCAAAATGGTGATAAGGGAATAGGTCTTGCCATTGCAAATTCTGGTGCTGTCCCAGGATTGATAACTATGATTGGGCATATAGAAACAGATATGCCAAATCTCATGGCTTTATCAGATGAGTTTTCCTTGGTGCGAACTCCAGATCAAGTTGTTTTGGATCATCTATTTGAAATTGAGGATGTAAGACTGGGATCTGTTGCACGGAAATCTATACCTCTTTTAGTAGATCTCTTGAAACCAATACCAGAAAGGCCTGGTGCTCCAGCAGCTGCCCTTAGACTCTTGATTTCCCTTGCAGATGGGAGTGATACAAATAAATTAATCCTTGCTGAAGCTGGAGCTCTGGAGGCTTTGAACAAATACCTGTCCTTGAGCCCTCAAGACACTACTGAGGCTACTATTTCTGACTTACTGAGAATATTATATTGCAATTCTGACCTAATTAATCATGAAGCATCGACAAATTCACTGAACCAACTCATAGCTGTTTTGCGTCTTGGTTCAAGAAATTCTAGATATAGTGCAGCTAGAGCACTCCATGAACTCTTTGATTCTCTGAATATTAGAGACTCAGAATTAGCTAAACAGGCCGTTCATCCATTGGTTGACATGCTGAATAATACATCAGGAAGTGAGCAGGAGGCTGCTTTAATGGCCTTGGTCAAGTTAATGTCAGGAAATTCTTCAAAAGCATCTCTGTTTACAGATGTGGAAGGCAACCCACTTGAAAGTTTACACAAAATATTGTCCTCCGCTTCATCCTTGGAGTTGAAGAATTATGCTGCGCAACTCTGCTTTGTACTGTTTGGTAATAGTAAGATCAGAGCAGAACGAATTGCCTCAGAATGCATAGAACCCCTTATATCACTGATGCAGTCTGATTCTGAGAGTGCAATAGAGTCTGGGGTTTGTGCTTTTGACAGATTGTTAGAAGATGAACATCAGGTAGAGCTTGCAGCAGCCTGTAACATCGTGGATTTCCTTGTCAGCTTGGTTTCTGGTACAAACTATCAGCTTATTGAGGCAACCATATCTGTTCTCCTCAGATTGGGCAAAGATAGGACTCCAACCAAATTAGACATGGTCAAATCTGGAATTATTAATAACTGTCTCAAGCTACTACCATTAGCACCTAGCTCATTATGCTCTACTATAGCTGAGCTGTTTCGCATCTTAACAAATAGTAATGCAATTGCCAGAAGTTCAGAGGCTGCAAAAATTGTAGAACCCCTTTTCCATGTTTTGCTATGTCGAGATTTCAACTTATGGGGACAGCATAGTGCCTTACAAGCACTTGTAAACATATTGGAAAAGCCACAAAGTCTTGCAACTTTAAAGCTTACACCTAGTGAAGTTATTGAACCCTTGATTTCTTTTCTGGAATCCCCATCCCAAGCTATTCAGCAACTTGGCACAGAACTCTTAGCTCATATTCTTGCACAGGAGCATTTTCAACAGGATATTTCAACAAAAAATGCAGTTCCACCTCTTGCAGTTGCTGATGCCGGAGGTATTTTTGAGCTTGCAAAGGTTATTATTCAAGATGATCCTCAACCGCCACATGCACTCTGGGAATCAGCTGCTTTAGTTCTCTCTAATATATTATATTCTGATGCGGATTACTATTTAAAGTTCCTCATAGCCCTTAACGCATTAGTAGTTCATGACACAAGTGATGCTTCAAGTGCTGAACAGATGGTGGAAGCTGGAGCTATAGATGCTCTGCTGGACCTTCTAAGATCTCATAATTGTGAAGAAGCATCTGGTAGATTACTCGAAGCTTTATTCAACAATGTGAACACCATTATCACAGTATCTATTAGATCCGCTACCAAATCAGAGCCTGGCAAGCTTCTTGCTGCTTTAGCTCTAGGAGATCTTTCACAGTACGAGGGACATGCTAGAGCTAGTGACTCAGTTTCTGCATGCCGTGCATTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGAAGATGGTGGCTATATGTGCATTGCAGAACTTCGTCATGAACAGCAGGACCAACAGAAGAGCTGTTGCAGAAGCTGGGGGCATATTGGTGATTCAGGAATTGCTGCTGTCTCCAAATACAGAAGTTGCTGCACAAGCAGCATTGCTGATCAAATTTTTGTTCTCTACCCACACTCTACAAGAATATGTGTCAAATGAGCTAATAAGGTCTTTGACAGCTTCATTGGAAAGAGAGTTGTGGTCAACTGCCACAATCAATGAAGAGGTTTTGAAAACACTGCATGTGATATTCATGAACTTCCCTAAGCTCCATGTGTCCGAAGCTGCAACAGTTTGTATTCCTCATTTGGTAGGAGCTCTTAAATCTGGCGGTGAAGCAGCTCAGGACTCCGTACTTGATACCTTTTGCTTGCTGAAACAATCTTGGTCAACTATGCCAATAGATATTGCAAAGTCTCAGGCTATAGTTGCTGCTGAAGCGATCCCCATCTTGCAAATGCTCATGAAAACCTGCCCACCAAGCTTCCATGAGAGGGCAGATTCTCTTCTGCACTGCTTACCAGGTTGTTTGACTGTCATCATTAAGCGTGGAAATAACCTCAAGCAAACTATGGGAGGTACATGTGCATTTTGCAGGTTGACAATAGGCAATGGTCCTCCAAACCAAACCAAGATGGTTCATGGTACTTCTCCAGAATGGAAAGAAGGATTCACGTGGGCATTTGATGTGCCTCCAAAGGGCCAAAAACTTCATATTGTATGCAAAAGCAAGAATACTTTTGGGAAGACAACTCTCGGAAGAGTCACTATCCAAATCGATAAAGTTGTGACTGAAGGAGTTTATAGCGGAATATTCAGTCTTAATCATCATGATGGCAATAAAGACGGTTCATCCCGAACTCTTGAAATTGAGGTTATGTGGTCCAATAGGATTTCTGATGAAGATATTTAA 6258 0.414 MSKSPSPEKHQSVYSSSEPREFIMATEIEDPESTMSTVAKLVEQLHAKLSSAQEKELITTRLLGIARRRKDGRALIGTHSQAMPLFINILRNGTSLAKVNVATILSVLCKDEDLRLKVLLGGCVPPLLSILKYESTDARKAAAEAIYQVSIGGLSEDNVGMKIFVTEDVVPTLWNLLSPKNKQDKIVEGFITGALRNLCGDKDGYWNATLEAGGIEIIVDLLSSDNAVSQSNAASLLARLMSAFSGSIPKVIDSGAVKALVRLVGEENNISVRAGAADALEALSSKSTNAKKAIVDSDGVQILIGAIVAPSKECMQSDGGQALQGHATRALANLCGGMPALIIYLAELSCSPRLTAPVGDIIGALAYTLMVFEEKVDDDQDHFDATKIEDTLVTLLKPRDNKLIQERVLEAMASLYGNVYLSKFLNQADSKKVLVGLITMAAIDVQGYLIRSLTSLCCDRVGIWEAIKKREGIQLLISMLGLSSEQHQEYSVELLAILTDQVEDSKWAITAAGGIPPLVQLLETGSQKAREEAAHVLWSLCCHSEDIRACVEIAGAIPAFLWLLKSGGPKGQEASALALMKLVRVADSATINQLLAMLLGDSPTSKGHIIQVLGHVLTVVSQKDLVEKGCAANKGLRCLVQVINASNEETQEFATSAIANLFTTRQDICDGLVNEDLVLPLMKLLTNKNQGVAIQSARALSSLSRPTNSKAANKLSYIVLEGDVQPLIKLAKTCCVDAAETSVAASESAVAALANLLFDPYIAAEALAEDVVPALTRILEKGTLEGKQNASRALHELLKHFSVGDLLKGDEQCRLTLLALVDSLRSMHIDETEAADALDVIALLARTKHDVSLTYPPLLVLADKSCLEPLVCCLADGPPIVQDKAIEILSRLCGDQPVVLGDLLSSSSRCTGSLAHRIINSASLEVKVGAAALLICAAKDKKELSMDLLDTSGYQKPLIYSLVDMMKQSSNCSLLEIEVCTPRGFMEKNAFPEVDESEIPDAATVLGGTVALWLLSIIASVQVTNKLIILEAGGLEILSEKLARHVSNPQAQYEDTEEIWISALLLAILFQDTKVIQSPATMCTVPSLSLLLTSEEVIDKYFAAQAMASLVQNGDKGIGLAIANSGAVPGLITMIGHIETDMPNLMALSDEFSLVRTPDQVVLDHLFEIEDVRLGSVARKSIPLLVDLLKPIPERPGAPAAALRLLISLADGSDTNKLILAEAGALEALNKYLSLSPQDTTEATISDLLRILYCNSDLINHEASTNSLNQLIAVLRLGSRNSRYSAARALHELFDSLNIRDSELAKQAVHPLVDMLNNTSGSEQEAALMALVKLMSGNSSKASLFTDVEGNPLESLHKILSSASSLELKNYAAQLCFVLFGNSKIRAERIASECIEPLISLMQSDSESAIESGVCAFDRLLEDEHQVELAAACNIVDFLVSLVSGTNYQLIEATISVLLRLGKDRTPTKLDMVKSGIINNCLKLLPLAPSSLCSTIAELFRILTNSNAIARSSEAAKIVEPLFHVLLCRDFNLWGQHSALQALVNILEKPQSLATLKLTPSEVIEPLISFLESPSQAIQQLGTELLAHILAQEHFQQDISTKNAVPPLAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNILYSDADYYLKFLIALNALVVHDTSDASSAEQMVEAGAIDALLDLLRSHNCEEASGRLLEALFNNVNTIITVSIRSATKSEPGKLLAALALGDLSQYEGHARASDSVSACRALISLLEDQPTEEMKMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAAQAALLIKFLFSTHTLQEYVSNELIRSLTASLERELWSTATINEEVLKTLHVIFMNFPKLHVSEAATVCIPHLVGALKSGGEAAQDSVLDTFCLLKQSWSTMPIDIAKSQAIVAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVIIKRGNNLKQTMGGTCAFCRLTIGNGPPNQTKMVHGTSPEWKEGFTWAFDVPPKGQKLHIVCKSKNTFGKTTLGRVTIQIDKVVTEGVYSGIFSLNHHDGNKDGSSRTLEIEVMWSNRISDEDI* 2086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1718 2085 SUPERFAMILY ARM repeat 387 730 IPR016024 -
Amo17g1718 2085 Gene3D - 1386 1653 IPR011989 -
Amo17g1718 2085 Gene3D C2 domain 1957 2080 IPR035892 -
Amo17g1718 2085 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Amo17g1718 2085 CDD C2 1959 2048 - -
Amo17g1718 2085 SUPERFAMILY ARM repeat 77 308 IPR016024 -
Amo17g1718 2085 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1607 2084 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Amo17g1718 2085 Gene3D - 383 630 IPR011989 -
Amo17g1718 2085 SUPERFAMILY ARM repeat 919 1137 IPR016024 -
Amo17g1718 2085 Pfam C2 domain 1958 2056 IPR000008 -
Amo17g1718 2085 SMART arm_5 665 705 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 544 584 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 1670 1711 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 111 151 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 711 758 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 1213 1253 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 1603 1647 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 158 200 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 1423 1463 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 244 285 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 759 799 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 854 894 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 201 242 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 623 663 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 460 500 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 1382 1422 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 287 336 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 1784 1824 IPR000225 GO:0005515
Amo17g1718 2085 SMART arm_5 501 542 IPR000225 GO:0005515
Amo17g1718 2085 SUPERFAMILY ARM repeat 1182 1592 IPR016024 -
Amo17g1718 2085 Gene3D - 247 380 IPR011989 -
Amo17g1718 2085 Gene3D - 1009 1158 IPR011989 -
Amo17g1718 2085 SMART C2_3c 1958 2053 IPR000008 -
Amo17g1718 2085 ProSiteProfiles C2 domain profile. 1938 2054 IPR000008 -
Amo17g1718 2085 Gene3D - 23 246 IPR011989 -
Amo17g1718 2085 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1956 2075 IPR035892 -
Amo17g1718 2085 SUPERFAMILY ARM repeat 635 968 IPR016024 -
Amo17g1718 2085 SUPERFAMILY ARM repeat 1632 1955 IPR016024 -
Amo17g1718 2085 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Amo17g1718 2085 Gene3D - 1655 1956 IPR011989 -
Amo17g1718 2085 Gene3D - 754 981 IPR011989 -
Amo17g1718 2085 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Amo17g1718 2085 Gene3D - 631 753 IPR011989 -
Amo17g1718 2085 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 13 1608 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Amo17g1718 2085 Gene3D - 1170 1365 IPR011989 -
Amo17g1718 2085 PANTHER - 1607 2084 - -
Amo17g1718 2085 PANTHER - 13 1608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1718 Amo-Chr17 73969748 73981684 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1718 432 684 U-box Gene Family AT2G23140 27.413 1.04e-11 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1718 - - gmx:100796864 3244.91