Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1704 ATGGTTTATTCCACCGTGAAGCACCTCAAAACGGGTCACAGTGCGTCGCTTCAGTGCACTGTGTGCTTGAGCGAGTTCAAGGACATGGACAAGCTCAGACTTTTGCCAAAGTGCAGTCACGTGTTTCACCCCGAGTGCATCGACGCGTGGCTCGCCTCGCACGTGACTTGTCCTGTCTGCAGGGCCAAGATGAAGTCGGAAAACATGGAGTTCAAGGTGGAGATTCAGGAGTTAGAGGGAAGTGCCAACCATATGTTCGATGAAATGTCTGAGAGAATGGGTGAGGTTTCTTGTGATGGGAACGAAGGTGGGGTTGGTGAGGGAGATGATGGGGTTTTTGGGGAGTGTCATGGGACCTCAAAGGTGAGAGCTTTTGGGTTGTTGGTGAGTTCCCACTCTACGGGTCACTCTCTTGTGGAACCGGGGAAGAGCTTGGAGTGGTTCACTTTGCGATTGCCTGAGGAATTGAGGAAGCAGATTCTGGAAGCCAATCATAAGTGTAGTGGTGGTAGTGGTGGGATGAAGCGTTCGACAAGCTACGACGTCGTTTTGCAGAGTGAAGTTGGTGAAGGTAGTAGTAGTAATAAGGGGAGTAAGAATAGTAGGTGGGTGTTGTCTATGACACCTCCGTTTGTTTCTCGCAGTTGGGGTCATTTTAGTACTTCTTTTAGTTTGGCACCGTCAAATGAGTGCTCAACATGCTCTGGGATTCCTAGGCTTTGGGGTTCTTCAGCGGCAAGGGAAGAGAAAGGATGTGAAGGGAGAGAGGTGTTCACAAAATTCATGGGTACAAATGGTAAATATGGAATAAATAAAAGAGTAAGTAACGAAACAAACTAG 840 0.4833 MVYSTVKHLKTGHSASLQCTVCLSEFKDMDKLRLLPKCSHVFHPECIDAWLASHVTCPVCRAKMKSENMEFKVEIQELEGSANHMFDEMSERMGEVSCDGNEGGVGEGDDGVFGECHGTSKVRAFGLLVSSHSTGHSLVEPGKSLEWFTLRLPEELRKQILEANHKCSGGSGGMKRSTSYDVVLQSEVGEGSSSNKGSKNSRWVLSMTPPFVSRSWGHFSTSFSLAPSNECSTCSGIPRLWGSSAAREEKGCEGREVFTKFMGTNGKYGINKRVSNETN* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1704 279 Coils Coil 61 81 - -
Amo17g1704 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 71 IPR013083 -
Amo17g1704 279 Pfam Ring finger domain 18 61 IPR001841 -
Amo17g1704 279 PANTHER RING FINGER DOMAIN-CONTAINING 1 182 - -
Amo17g1704 279 SMART ring_2 19 60 IPR001841 -
Amo17g1704 279 CDD RING-H2_EL5_like 18 61 - -
Amo17g1704 279 ProSiteProfiles Zinc finger RING-type profile. 19 61 IPR001841 -
Amo17g1704 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL31-LIKE 1 182 - -
Amo17g1704 279 SUPERFAMILY RING/U-box 16 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1704 Amo-Chr17 72481372 72484330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1704 1 215 Rapid Response to Elicitors AT3G05200 34.764 3.72e-34 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1704 K10664 - aip:107636030 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1704 17 72481372 72484330 Amo17g3094 17 134933094 134934251 PCT
Amo17g3094 17 134933094 134934251 Amo17g1704 17 72481372 72484330 PCT