Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1687 ATGGGAAGGTCTCCATGCTGCGATGAAAACGGCCTAAAGAAAGGACCATGGACTCCTGAAGAAGATCAAAAGCTAGTCGATCATATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTTCCTAAGTTAGCAGGGCTTAATAGATGTGGAAAAAGCTGTAGACTAAGGTGGACTAACTATTTGAGGCCTGACATTAAGAGGGGGAAATTCTCCCAAGAAGAGGAGCAAACTATTCTGCATCTGCATTCCATTCTTGGAAATAAATGGTCAGCAATTGCAACTCATCTTCCAGGAAGGACAGACAATGAGATAAAAAATTTCTGGAACACACATTTAAAGAAGAGGCTAATTCAGATGGGTTTCGATCCAATGACACATCAGCCAAGAACTGATCTTTTTTCAACATTGCCGTATCTACTAGCTTTGGCCAACATCACCGATTTTATGGATCATCATCAATCGTTTGATGAGCATTCTCTAAGGCTCCAATTAGAGGCACTTCAATTAGCAAAGATTCAACAACTTAATTACTTACTTCAATCCACTACTACTACTACTACTACTACTAATAATAATAATAATAATAATAATACTAATAATAATTCCTTATTAAGCAACATTATTAGTAGTAGTATTAATACCAATAATAACTCCTATGACCAAAATAATAATTCCATCACAGACATGGAAGCTTTCAATTTATTAAATTCAATCACGAATAATAATGTCAAAGAAAATAACCCAGTTACCACATTTTCTCATGATGAGATTATTGCTGATTCTTCTTCCCAACCACTCCACCAATCAAGCAACATGCTATTACCTCATTTATTAGACCCACAGCCACAAGTCTCTTTGACAAGTTCCCAATCAAGTTTGAATAGTACTAAGCTGGATCAAGGTATTACTAATAATAATAATGATTTGGAAGTTATGGGTAGTGAAGGCGATTATCACATGATTTCTCCATGGAACATCATAACATCTTTATCATCATCGTCGTCATCGTCATCATCGCCTGCATCTTCATCTGTTCCACTAAATGCAAGCAGCAGCAATACTTCTAGCTATGGAGGAACCTCCTCTTACTGGCCTGAACTTTTTTATGGGAATCCCATTATGCATGATGAGTTATACTAA 1140 0.3675 MGRSPCCDENGLKKGPWTPEEDQKLVDHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKRLIQMGFDPMTHQPRTDLFSTLPYLLALANITDFMDHHQSFDEHSLRLQLEALQLAKIQQLNYLLQSTTTTTTTTNNNNNNNNTNNNSLLSNIISSSINTNNNSYDQNNNSITDMEAFNLLNSITNNNVKENNPVTTFSHDEIIADSSSQPLHQSSNMLLPHLLDPQPQVSLTSSQSSLNSTKLDQGITNNNNDLEVMGSEGDYHMISPWNIITSLSSSSSSSSSPASSSVPLNASSSNTSSYGGTSSYWPELFYGNPIMHDELY* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1687 379 CDD SANT 69 112 IPR001005 -
Amo17g1687 379 MobiDBLite consensus disorder prediction 282 311 - -
Amo17g1687 379 CDD SANT 16 61 IPR001005 -
Amo17g1687 379 Gene3D - 13 66 - -
Amo17g1687 379 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Amo17g1687 379 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Amo17g1687 379 Gene3D - 69 116 - -
Amo17g1687 379 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 291 - -
Amo17g1687 379 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Amo17g1687 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Amo17g1687 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 291 - -
Amo17g1687 379 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Amo17g1687 379 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Amo17g1687 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Amo17g1687 379 MobiDBLite consensus disorder prediction 335 358 - -
Amo17g1687 379 MobiDBLite consensus disorder prediction 282 314 - -
Amo17g1687 379 SMART sant 66 114 IPR001005 -
Amo17g1687 379 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1687 Amo-Chr17 71814224 71815981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1687 1 374 MYB Transcription Factor Family AT1G34670 50.633 9.10e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo17g1687 Myb_DNA-binding 8.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1687 K09422 - gmx:100782792 407.142