Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1639 ATGGAGTCGGAGGAATCCCGGTCCCAGTTACCGGGAGACGAAGCAACAGCGGTTGAGGGAACCGCTGAGCAACTGGTGGCGAGGGCCATAGCTCCCATCAAGAAGGAATTCCTTCGCCCACCACCTGTTCGCTCTTCCTCCGCAGACAACGAAGCCGCTGCCGCCGCCACCAATGATAATAAGAACCCTGCTCATCCTGGTTCGGGTCTTCTAAAGGACAAGAAGTCCAAGCGCCAGCTCAAGCGTGAACGCCGTCAGGAGCAAAAGTCGGCACGAAACCTCTGCCCGGAAGTTGCAAAGACCGGTGATGTTACTTCATGTCCTTATAAAGACAAATGCCGCTTCAGCCATGATATTGAAGCCTTCAAGGCCCAGAAACCAGCTGATCTAGAAGGACAATGTCCTTTTGTTAAGTCTGGAGGGCCTTGCCCTTATGGGTTAGCATGTAGATTTTCAAGTACCCATGAAGATGGTGTTCYTTCTTCTACTGGCCATCTCAACGGTCTTAAGAACMSTTCTGAGGTTAATGGATTGAGCAAAGATGTTCAGAAGCTTCTGTGGAAAAATAAGATGAGGTTCTCCAAGGCTGATGCCAAACTCAAAAGTCTTGGCCTCTTGGGCCCCAAGTCAAAAATGAAGAACTTGGAAAATAAAGATGGTGAAAATGGCGGTTCAAATAAGTGTAGCCTTTCTGATGACAATGGGTGTTGTGAAGTAGCCTCTGACTTGGGTCCTAAGTTGGAAGAAGCTATAAAGGATGATGATGCTGATGCAAAATATGAAACCGATGAACTTTGTCCACAGAAAAGAAGAAAAACTGGAGTAAATTGTGATCCTAGTGAGATAGAAAAAGGTGTGAATGTTACTGAAGAAATTGAAAGAGGCAGCATAAATACTGAACCAGAAGCAGGATGTGATACTTTAACCATAAAAACTGATCTAAGTCTGAAGTTACATCCACGTGAAAAGAAGCTTATTGATTTTAGGGACAAATTGTATCTTGCACCCTTGACCACAGTTGGAAAYCTCCCTTTTAGGAGGGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAGATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCTGAATGGGCATTGCTGAGACGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGTGCATATCCAGATACTGTGGCTCGCACTGTTGAACTAATAGAACAAGAATGTACCATAGATTTTATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTGACAAAACCAATGCGGATGAAAAATATTGTTGAAGTAGCTTCAAGCACAGTGGACAAACCAATAACTATCAAGGTACGGACTGCTTATTTTGAAGGAAAGAATCGCATTGATTCTCTCATTGCAGACATGGGCTCTTGGGGAGCTGGCTCAGTAACAATACATGGAAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGATTGGGATTACATATACCAGTGTGGAAGGAAGGCCCCTAAGACATTGCCAGTAGTGGGGAATGGGGATGTTTTTTCGTTTGTAGACTGGAATAACCACAGAACTGCATGTCCTGAACTTGCTACCTGCATGGTTGCTCGTGGTGCTCTGATTAAACCTTGGATATTTACTGAGATCARGGAACAGAGACATTGGGACATCAGTTCTGGTGAGCGACTAAATATTCTCAAAGAGTTTGTGCATTTTGGCCTTGAACACTGGGGATCTGACACAAAAGGAGTGGAGACAACGAGGAGGTTCTTGTTGGAATGGCTTAGCTACACTTGTAGGTACGTACCTGTTGGTCTTCTGGAAGTGATTCCACAACGAATAAACTGGCGTCCACCTTCTTACTATGGGCGAGACGAGCTTGAGACGCTGATGGCCTCAGACTCGGCAGCTGACTGGATACGCATATCAGAGATGCTACTAGGCAAGGTTCCGGATGGCTTTACATTTGCTCCAAAGCATAAATCAAATGCTTACGATAGAGCCGAAAATGGCTGA 2052 0.4464 MESEESRSQLPGDEATAVEGTAEQLVARAIAPIKKEFLRPPPVRSSSADNEAAAAATNDNKNPAHPGSGLLKDKKSKRQLKRERRQEQKSARNLCPEVAKTGDVTSCPYKDKCRFSHDIEAFKAQKPADLEGQCPFVKSGGPCPYGLACRFSSTHEDGVXSSTGHLNGLKNXSEVNGLSKDVQKLLWKNKMRFSKADAKLKSLGLLGPKSKMKNLENKDGENGGSNKCSLSDDNGCCEVASDLGPKLEEAIKDDDADAKYETDELCPQKRRKTGVNCDPSEIEKGVNVTEEIERGSINTEPEAGCDTLTIKTDLSLKLHPREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNIVEVASSTVDKPITIKVRTAYFEGKNRIDSLIADMGSWGAGSVTIHGRSRQQRYSKLADWDYIYQCGRKAPKTLPVVGNGDVFSFVDWNNHRTACPELATCMVARGALIKPWIFTEIXEQRHWDISSGERLNILKEFVHFGLEHWGSDTKGVETTRRFLLEWLSYTCRYVPVGLLEVIPQRINWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1639 683 Pfam Dihydrouridine synthase (Dus) 334 571 IPR035587 -
Amo17g1639 683 SUPERFAMILY FMN-linked oxidoreductases 331 644 - -
Amo17g1639 683 MobiDBLite consensus disorder prediction 1 94 - -
Amo17g1639 683 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 25 683 - -
Amo17g1639 683 ProSiteProfiles Zinc finger C3H1-type profile. 89 120 IPR000571 GO:0046872
Amo17g1639 683 Gene3D Aldolase class I 327 569 IPR013785 -
Amo17g1639 683 ProSitePatterns Uncharacterized protein family UPF0034 signature. 415 433 IPR018517 GO:0008033|GO:0017150|GO:0050660
Amo17g1639 683 Gene3D - 84 163 - -
Amo17g1639 683 CDD DUS_like_FMN 331 566 IPR035587 -
Amo17g1639 683 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 25 683 - -
Amo17g1639 683 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1639 Amo-Chr17 68462405 68467891 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo17g1639 Dus 4.5e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1639 K05544 - gmx:100783494 1080.09